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A

A - Static variable in class ec.app.ecsuite.ECSuite
A0 - Class in ec.app.multiplexer.func
A0() - Constructor for class ec.app.multiplexer.func.A0
A0 - Class in ec.app.multiplexerslow.func
A0() - Constructor for class ec.app.multiplexerslow.func.A0
A1 - Class in ec.app.multiplexer.func
A1() - Constructor for class ec.app.multiplexer.func.A1
A1 - Class in ec.app.multiplexerslow.func
A1() - Constructor for class ec.app.multiplexerslow.func.A1
A2 - Class in ec.app.multiplexer.func
A2() - Constructor for class ec.app.multiplexer.func.A2
A2 - Class in ec.app.multiplexerslow.func
A2() - Constructor for class ec.app.multiplexerslow.func.A2
A_CHECKPOINT - Static variable in class ec.eval.Slave: The argument indicating that we're starting up from a checkpoint file.
A_CHECKPOINT - Static variable in class ec.Evolve: The argument indicating that we're starting up from a checkpoint file.
A_FILE - Static variable in class ec.eval.Slave: The argument indicating that we're starting fresh from a new parameter file.
A_FILE - Static variable in class ec.Evolve: The argument indicating that we're starting fresh from a new parameter file.
A_PARAMETER - Static variable in class com.parabon.ec.Evolve: Deprecated. Use -D to set system properties instead.
AbstractIslandExchangeServer<D extends IslandInfo> - Class in ec.exchange: Base class for island exchange servers.
AbstractIslandExchangeServer() - Constructor for class ec.exchange.AbstractIslandExchangeServer
accept - Variable in class ec.app.edge.Edge
Accept - Class in ec.app.edge.func
Accept() - Constructor for class ec.app.edge.func.Accept
ACCESSED - Static variable in class ec.util.ParameterDatabaseEvent
activateOptions() - Method in class com.parabon.ec.logging.DirectLayout: No-op
Add - Class in ec.app.regression.func
Add() - Constructor for class ec.app.regression.func.Add
Add - Class in ec.app.twobox.func
Add() - Constructor for class ec.app.twobox.func.Add
addConfiguration(File) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Adds a configuration file to the parameter database.
addListener(ParameterDatabaseListener) - Method in class ec.util.ParameterDatabase
addLog(File, int, boolean, boolean, boolean) - Method in class com.parabon.ec.logging.LoggerOutput: Creates a log based on a file pathname.
addLog(File, int, boolean, boolean) - Method in class com.parabon.ec.logging.LoggerOutput
addLog(int, int, boolean) - Method in class com.parabon.ec.logging.LoggerOutput: Creates a log writing to stderr or stdout.
addLog(File, int, boolean, boolean, boolean) - Method in interface ec.util.IOutput: Creates a new log of minimal verbosity verbosity and adds it to Output.
addLog(File, int, boolean, boolean) - Method in interface ec.util.IOutput: Creates a new log of minimal verbosity verbosity and adds it to Output.
addLog(int, int, boolean) - Method in interface ec.util.IOutput: Creates a new log of minimal verbosity verbosity and adds it to Output.
addLog(File, int, boolean, boolean, boolean) - Method in class ec.util.Output
addLog(File, int, boolean, boolean) - Method in class ec.util.Output
addLog(int, int, boolean) - Method in class ec.util.Output
addLog(Writer, LogRestarter, int, boolean, boolean) - Method in class ec.util.Output
addLog(Log) - Method in class ec.util.Output
addParameters(AbstractConfiguration) - Method in class com.parabon.ec.Evolve
addParameters(File) - Method in class com.parabon.ec.Evolve: Appends the parameters in the specified file to the parameter database.
addParameters(String) - Method in class com.parabon.ec.Evolve: Appends the parameters in the specified file to the parameter database.
addPropertyDirect(String, Object) - Method in class com.parabon.ec.util.LocatedPropertiesConfiguration
addPropertyDirect(String, Object) - Method in class com.parabon.ec.util.LocatedSystemConfiguration
addRandomRule(EvolutionState, int) - Method in class ec.rule.RuleSet: Add a random rule to the rule set
address - Variable in class ec.exchange.IslandExchangeServer.IslandExchangeIslandInfo
addressPart - Variable in class ec.app.multiplexerslow.Multiplexer
addRule(Rule) - Method in class ec.rule.RuleSet: Add a rule directly to the rule set.
addTreeModelListener(TreeModelListener) - Method in class ec.util.ReflectedObject
ADF - Class in ec.gp: An ADF is a GPNode which implements an "Automatically Defined Function", as described in Koza II.
ADF() - Constructor for class ec.gp.ADF
adf - Variable in class ec.gp.ADFContext: The ADF/ADM node proper
ADFArgument - Class in ec.gp: An ADFArgument is a GPNode which represents an ADF's argument terminal, its counterpart which returns argument values in its associated function tree.
ADFArgument() - Constructor for class ec.gp.ADFArgument
ADFContext - Class in ec.gp: ADFContext is the object pushed onto an ADF stack which represents the current context of an ADM or ADF function call, that is, how to get the argument values that argument_terminals need to return.
ADFContext() - Constructor for class ec.gp.ADFContext
ADFStack - Class in ec.gp: ADFStack is a special data object used to hold ADF data.
ADFStack() - Constructor for class ec.gp.ADFStack
adjustedFitness() - Method in class ec.gp.koza.KozaFitness: Returns the adjusted fitness metric, which recasts the fitness to the half-open interval (0,1], where 1 is ideal and 0 is worst.
ADM - Class in ec.gp: An ADM is an ADF which doesn't evaluate its arguments beforehand, but instead only evaluates them (and possibly repeatedly) when necessary at runtime.
ADM() - Constructor for class ec.gp.ADM
afterCoevolutionaryEvaluation(EvolutionState, Population, GroupedProblemForm) - Method in class ec.coevolve.MultiPopCoevolutionaryEvaluator
ALL_LOGS - Static variable in interface ec.util.IOutput
allowOverEvaluation - Variable in class ec.coevolve.CompetitiveEvaluator
amax - Variable in class ec.app.multiplexerslow.Multiplexer
And - Class in ec.app.multiplexer.func
And() - Constructor for class ec.app.multiplexer.func.And
And - Class in ec.app.multiplexerslow.func
And() - Constructor for class ec.app.multiplexerslow.func.And
And - Class in ec.app.parity.func
And() - Constructor for class ec.app.parity.func.And
Announcement - Class in ec.util: Announcements are messages which are stored by ec.util.Output in memory, in addition to being logged out to files.
Announcement(String, int) - Constructor for class ec.util.Announcement: Creates a new announcement with text t and verbosity value v
Ant - Class in ec.app.ant: Ant implements the Artificial Ant problem.
Ant() - Constructor for class ec.app.ant.Ant
AntData - Class in ec.app.ant: Since Ant doesn't actually pass any information, this object is effectively empty.
AntData() - Constructor for class ec.app.ant.AntData
AntStatistics - Class in ec.app.ant
AntStatistics() - Constructor for class ec.app.ant.AntStatistics
appendOnRestart - Variable in class ec.util.Log: If the log writes to a file, should it append to the file on restart, or should it overwrite the file?
ARCHIVE_PREAMBLE - Static variable in class ec.multiobjective.spea2.SPEA2Subpopulation
archiveSize - Variable in class ec.multiobjective.spea2.SPEA2Subpopulation: The SPEA2 archive size
arg_proto - Variable in class ec.gp.ADFContext: A prototypical GPData node.
argposition - Variable in class ec.gp.GPNode: The argument position of the child in its parent.
arguments - Variable in class ec.gp.ADFContext: An array of GPData nodes (none of the null, when it's used) holding an ADF's arguments' return results
assignGlobalBest(PSOSubpopulation) - Method in class ec.pso.PSOBreeder
assignNeighborhoodBests(PSOSubpopulation) - Method in class ec.pso.PSOBreeder
assignPersonalBests(PSOSubpopulation) - Method in class ec.pso.PSOBreeder
associatedTree - Variable in class ec.gp.ADF: The ADF's associated tree
atDepth() - Method in class ec.gp.GPNode: Returns the depth at which I appear in the tree, which is a value >= 0.
ATE - Static variable in class ec.app.ant.Ant
author - Static variable in class com.parabon.ec.util.Version
author - Static variable in class ec.util.Version
authorEmail0 - Static variable in class ec.util.Version
authorEmail1 - Static variable in class ec.util.Version
authorEmail2 - Static variable in class ec.util.Version
authorURL - Static variable in class com.parabon.ec.util.Version
authorURL - Static variable in class ec.util.Version
available() - Method in class ec.util.CompressingInputStream: available() should return the number of bytes that can be read without running into blocking wait.

B

BAccept - Class in ec.app.edge.func
BAccept() - Constructor for class ec.app.edge.func.BAccept
BAD - Static variable in class ec.app.edge.Edge
BadParameterException - Exception in ec.util: Thrown when you attempt to create a Parameter from bad path items.
BadParameterException(String) - Constructor for exception ec.util.BadParameterException
base() - Static method in class ec.breed.BreedDefaults: Returns the default base.
base() - Static method in class ec.ECDefaults: Returns the default base.
base() - Static method in class ec.es.ESDefaults: Returns the default base.
base - Variable in class ec.exchange.InterPopulationExchange: My parameter base -- I need to keep this in order to help the server reinitialize contacts
base - Variable in class ec.exchange.IslandExchange: My parameter base -- I need to keep this in order to help the server reinitialize contacts
base() - Static method in class ec.gp.breed.GPBreedDefaults: Returns the default base, which is built off of the GPDefaults base.
base() - Static method in class ec.gp.build.GPBuildDefaults: Returns the default base.
base() - Static method in class ec.gp.GPDefaults: Returns the default base.
base() - Static method in class ec.gp.koza.GPKozaDefaults: Returns the default base, which is built off of the GPDefaults base.
base() - Static method in class ec.multiobjective.MultiObjectiveDefaults: Returns the default base.
base() - Static method in class ec.rule.RuleDefaults: Returns the default base.
base() - Static method in class ec.select.SelectDefaults: Returns the default base.
base() - Static method in class ec.simple.SimpleDefaults: Returns the default base.
base() - Static method in class ec.spatial.SpatialDefaults: Returns the default base.
base() - Static method in class ec.steadystate.SteadyStateDefaults: Returns the default base.
base() - Static method in class ec.vector.VectorDefaults: Returns the default base.
batchMode - Variable in class ec.eval.MasterProblem
BBud - Class in ec.app.edge.func
BBud() - Constructor for class ec.app.edge.func.BBud
beforeCoevolutionaryEvaluation(EvolutionState, Population, GroupedProblemForm) - Method in class ec.coevolve.MultiPopCoevolutionaryEvaluator
Best1BinDEBreeder - Class in ec.de: Best1BinDEBreeder implements the DE/best/1/bin Differential Evolution algorithm.
Best1BinDEBreeder() - Constructor for class ec.de.Best1BinDEBreeder
best_of_run - Variable in class ec.gp.koza.KozaStatistics: The best individual we've found so far
best_of_run - Variable in class ec.simple.SimpleStatistics: The best individual we've found so far
best_of_run_a - Variable in class ec.gp.koza.KozaShortStatistics
best_of_run_a - Variable in class ec.simple.SimpleShortStatistics
bestFitness_ - Variable in class com.parabon.ec.simple.SimpleBoundedFitness
bestn - Variable in class ec.select.BestSelection
BestSelection - Class in ec.select: Picks among the best n individuals in a population in direct proportion to their absolute fitnesses as returned by their fitness() methods relative to the fitnesses of the other "best" individuals in that n.
BestSelection() - Constructor for class ec.select.BestSelection
bestSoFar - Variable in class ec.de.Best1BinDEBreeder
betterThan(Fitness) - Method in class com.parabon.ec.simple.SimpleBoundedFitness
betterThan(Fitness) - Method in class ec.Fitness: Should return true if this fitness is clearly better than _fitness; You may assume that _fitness is of the same class as yourself.
betterThan(Fitness) - Method in class ec.gp.koza.KozaFitness
betterThan(Fitness) - Method in class ec.multiobjective.MultiObjectiveFitness: Returns true if I'm better than _fitness.
betterThan(Fitness) - Method in class ec.simple.SimpleFitness
bits - Variable in class ec.app.multiplexer.Multiplexer
bits - Variable in class ec.app.multiplexerslow.Multiplexer
bits - Variable in class ec.app.parity.Parity
BitVectorIndividual - Class in ec.vector: BitVectorIndividual is a VectorIndividual whose genome is an array of booleans.
BitVectorIndividual() - Constructor for class ec.vector.BitVectorIndividual
BLoop - Class in ec.app.edge.func
BLoop() - Constructor for class ec.app.edge.func.BLoop
bp - Variable in class ec.steadystate.SteadyStateBreeder: If st.firstTimeAround, this acts exactly like SimpleBreeder.
BreedDefaults - Class in ec.breed
BreedDefaults() - Constructor for class ec.breed.BreedDefaults
Breeder - Class in ec: A Breeder is a singleton object which is responsible for the breeding process during the course of an evolutionary run.
Breeder() - Constructor for class ec.Breeder
breeder - Variable in class ec.EvolutionState: The population breeder, a singleton object.
breedIndividual(EvolutionState, int, int) - Method in class ec.steadystate.SteadyStateBreeder
BreedingPipeline - Class in ec: A BreedingPipeline is a BreedingSource which provides "fresh" individuals which can be used to fill a new population.
BreedingPipeline() - Constructor for class ec.BreedingPipeline
BreedingSource - Class in ec: A BreedingSource is a Prototype which provides Individuals to populate new populations based on old ones.
BreedingSource() - Constructor for class ec.BreedingSource
breedPopChunk(Population, EvolutionState, int[], int[], int) - Method in class ec.es.MuCommaLambdaBreeder: A private helper function for breedPopulation which breeds a chunk of individuals in a subpopulation for a given thread.
breedPopChunk(Population, EvolutionState, int[], int[], int) - Method in class ec.multiobjective.spea2.SPEA2Breeder: A private helper function for breedPopulation which breeds a chunk of individuals in a subpopulation for a given thread.
breedPopChunk(Population, EvolutionState, int[], int[], int) - Method in class ec.simple.SimpleBreeder: A private helper function for breedPopulation which breeds a chunk of individuals in a subpopulation for a given thread.
breedPopulation(EvolutionState) - Method in class ec.Breeder: Breeds state.population, returning a new population.
breedPopulation(EvolutionState) - Method in class ec.de.DEBreeder
breedPopulation(EvolutionState) - Method in class ec.es.MuCommaLambdaBreeder
breedPopulation(EvolutionState) - Method in class ec.multiobjective.spea2.SPEA2Breeder: A simple breeder that doesn't attempt to do any cross- population breeding.
breedPopulation(EvolutionState) - Method in class ec.pso.PSOBreeder
breedPopulation(EvolutionState) - Method in class ec.simple.SimpleBreeder: A simple breeder that doesn't attempt to do any cross- population breeding.
breedPopulation(EvolutionState) - Method in class ec.spatial.SpatialBreeder
breedthreads - Variable in class ec.EvolutionState: The requested number of threads to be used in breeding, excepting perhaps a "parent" thread which gathers the other threads.
BStart - Class in ec.app.edge.func
BStart() - Constructor for class ec.app.edge.func.BStart
BucketTournamentSelection - Class in ec.parsimony: Does a tournament selection, limited to the subpopulation it's working in at the time.
BucketTournamentSelection() - Constructor for class ec.parsimony.BucketTournamentSelection
Bud - Class in ec.app.edge.func
Bud() - Constructor for class ec.app.edge.func.Bud
buffer - Variable in class ec.breed.BufferedBreedingPipeline
BufferedBreedingPipeline - Class in ec.breed: If empty, a BufferedBreedingPipeline makes a request of exactly num-inds individuals from a single child source; it then uses these individuals to fill requests (returning min each time), until the buffer is emptied, at which time it grabs exactly num-inds more individuals, and so on.
BufferedBreedingPipeline() - Constructor for class ec.breed.BufferedBreedingPipeline
buildDyckWord(int, int[], int[], EvolutionState, int) - Method in class ec.gp.build.RandTree
builder - Variable in class ec.gp.koza.MutationPipeline: How the pipeline builds a new subtree
buildTree(EvolutionState, int) - Method in class ec.gp.GPTree: Builds a new randomly-generated rooted tree and attaches it to the GPTree.
buildTreeModel() - Method in class ec.util.ParameterDatabase: Builds a TreeModel from the available property keys.
ByteVectorIndividual - Class in ec.vector: ByteVectorIndividual is a VectorIndividual whose genome is an array of bytes.
ByteVectorIndividual() - Constructor for class ec.vector.ByteVectorIndividual

C

C_ANY_POINT - Static variable in class ec.vector.VectorSpecies
C_EXACTLY_ONE_FIFTH_BETTER - Static variable in class ec.es.MuCommaLambdaBreeder
C_GAUSS_MUTATION - Static variable in class ec.vector.FloatVectorSpecies
C_HERE - Static variable in interface ec.util.IParameterDatabase
C_ONE_POINT - Static variable in class ec.vector.VectorSpecies
C_OVER_ONE_FIFTH_BETTER - Static variable in class ec.es.MuCommaLambdaBreeder
C_RESET_MUTATION - Static variable in class ec.vector.FloatVectorSpecies
C_STARTED_FRESH - Static variable in class ec.EvolutionState: "The population has started fresh (not from a checkpoint)."
C_STARTED_FROM_CHECKPOINT - Static variable in class ec.EvolutionState: "The population started from a checkpoint."
C_TWO_POINT - Static variable in class ec.vector.VectorSpecies
C_UNDER_ONE_FIFTH_BETTER - Static variable in class ec.es.MuCommaLambdaBreeder
CACHE_SIZE - Static variable in class ec.gp.build.PTCFunctionSet
calcDistance(SPEA2MultiObjectiveFitness) - Method in class ec.multiobjective.spea2.SPEA2MultiObjectiveFitness: Returns the sum of the squared differences between the vector fitness values.
canEvaluate() - Method in class ec.eval.MasterProblem
canEvaluate() - Method in class ec.Problem: Asynchronous Steady-State EC only: Returns true if the problem is ready to evaluate.
canEvaluate() - Method in interface ec.simple.SimpleProblemForm
canEvaluate() - Method in class ec.steadystate.SteadyStateEvaluator: Returns true if we're ready to evaluate an individual.
canPick() - Method in class ec.gp.GPNodeBuilder: Returns true if some size distribution (either minSize and maxSize, or sizeDistribution) is set up by the user in order to pick sizes randomly.
chatty - Variable in class ec.exchange.InterPopulationExchange
CHECK_BOUNDARY - Static variable in class ec.gp.GPNodeBuilder
CHECK_BOUNDARY - Static variable in class ec.rule.RuleSetConstraints
CHECKBOUNDARY - Static variable in class ec.BreedingSource: CheckBoundary is 8
CHECKBOUNDARY - Static variable in class ec.gp.build.Uniform: CheckBoundary is 8
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.ant.func.IfFoodAhead
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.ant.func.Left
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.ant.func.Move
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.ant.func.Progn2
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.ant.func.Progn3
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.ant.func.Progn4
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.ant.func.Right
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.edge.func.Accept
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.edge.func.BAccept
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.edge.func.BBud
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.edge.func.BLoop
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.edge.func.BStart
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.edge.func.Bud
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.edge.func.Double
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.edge.func.Epsilon
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.edge.func.Loop
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.edge.func.One
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.edge.func.Reverse
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.edge.func.Split
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.edge.func.Start
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.edge.func.Zero
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.lawnmower.func.Frog
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.lawnmower.func.Left
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.lawnmower.func.Mow
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.lawnmower.func.Progn2
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.lawnmower.func.V8a
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.multiplexer.func.A0
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.multiplexer.func.A1
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.multiplexer.func.A2
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.multiplexer.func.And
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.multiplexer.func.D0
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.multiplexer.func.D1
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.multiplexer.func.D2
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.multiplexer.func.D3
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.multiplexer.func.D4
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.multiplexer.func.D5
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.multiplexer.func.D6
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.multiplexer.func.D7
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.multiplexer.func.If
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.multiplexer.func.Not
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.multiplexer.func.Or
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.multiplexerslow.func.A0
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.multiplexerslow.func.A1
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.multiplexerslow.func.A2
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.multiplexerslow.func.And
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.multiplexerslow.func.D0
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.multiplexerslow.func.D1
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.multiplexerslow.func.D2
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.multiplexerslow.func.D3
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.multiplexerslow.func.D4
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.multiplexerslow.func.D5
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.multiplexerslow.func.D6
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.multiplexerslow.func.D7
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.multiplexerslow.func.If
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.multiplexerslow.func.Not
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.multiplexerslow.func.Or
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.parity.func.And
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.parity.func.D0
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.parity.func.D1
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.parity.func.D10
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.parity.func.D11
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.parity.func.D12
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.parity.func.D13
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.parity.func.D14
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.parity.func.D15
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.parity.func.D16
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.parity.func.D17
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.parity.func.D18
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.parity.func.D19
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.parity.func.D2
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.parity.func.D20
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.parity.func.D21
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.parity.func.D22
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.parity.func.D23
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.parity.func.D24
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.parity.func.D25
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.parity.func.D26
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.parity.func.D27
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.parity.func.D28
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.parity.func.D29
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.parity.func.D3
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.parity.func.D30
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.parity.func.D31
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.parity.func.D4
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.parity.func.D5
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.parity.func.D6
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.parity.func.D7
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.parity.func.D8
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.parity.func.D9
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.parity.func.Nand
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.parity.func.Nor
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.parity.func.Or
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.regression.func.Add
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.regression.func.Cos
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.regression.func.Div
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.regression.func.Exp
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.regression.func.Log
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.regression.func.Mul
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.regression.func.Sin
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.regression.func.Sub
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.regression.func.X
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.twobox.func.Add
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.twobox.func.Div
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.twobox.func.H0
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.twobox.func.H1
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.twobox.func.L0
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.twobox.func.L1
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.twobox.func.Mul
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.twobox.func.Sub
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.twobox.func.W0
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.twobox.func.W1
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.gp.ADF: Checks type-compatibility constraints between the ADF, its argument terminals, and the tree type of its associated tree, and also checks to make sure the tree exists, there aren't invalid argument terminals in it, and there are sufficient argument terminals (a warning).
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.gp.ERC: Checks to make certain that the ERC has no children.
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.gp.GPNode: You ought to override this method to check to make sure that the constraints are valid as best you can tell.
checkDyckWord(String) - Method in class ec.gp.build.RandTree
checkpoint - Variable in class ec.EvolutionState: Should we checkpoint at all?
Checkpoint - Class in ec.util: Checkpoints ec.EvolutionState objects out to checkpoint files, or restores the same from checkpoint files.
Checkpoint() - Constructor for class ec.util.Checkpoint
checkpointModulo - Variable in class ec.EvolutionState: The requested number of generations that should pass before we write out a checkpoint file.
checkpointPrefix - Variable in class ec.EvolutionState: The requested prefix start filenames, not including a following period.
checkPreamble(String, EvolutionState, LineNumberReader) - Static method in class ec.util.Code: Finds the next nonblank line, then trims the line and checks the preamble.
child - Variable in class ec.gp.GPTree: the root GPNode in the GPTree
CHILD_D - Variable in class ec.gp.build.Uniform
children - Variable in class ec.gp.GPNode
children - Variable in class ec.Statistics
childtypes - Variable in class ec.gp.GPNodeConstraints: The children types for a GPNode
chunksize - Variable in class ec.vector.VectorSpecies: How big of chunks should we define for crossover?
clamp() - Method in class ec.vector.ByteVectorIndividual: Clips each gene value to be within its specified [min,max] range.
clamp() - Method in class ec.vector.DoubleVectorIndividual: Clips each gene value to be within its specified [min,max] range.
clamp() - Method in class ec.vector.FloatVectorIndividual: Clips each gene value to be within its specified [min,max] range.
clamp() - Method in class ec.vector.IntegerVectorIndividual: Clips each gene value to be within its specified [min,max] range.
clamp() - Method in class ec.vector.LongVectorIndividual: Clips each gene value to be within its specified [min,max] range.
clamp() - Method in class ec.vector.ShortVectorIndividual: Clips each gene value to be within its specified [min,max] range.
clampRange - Variable in class ec.pso.PSOSubpopulation
cleanup(EvolutionState) - Static method in class ec.Evolve: Begins a fresh evolutionary run with a given state.
clearAnnouncements() - Method in class com.parabon.ec.logging.LoggerOutput: Ignored for log4j loggers.
clearAnnouncements() - Method in interface ec.util.IOutput: Clears out announcements.
clearAnnouncements() - Method in class ec.util.Output
clearErrors() - Method in class com.parabon.ec.logging.LoggerOutput: Clears the fatal error flag.
clearErrors() - Method in interface ec.util.IOutput: Clears the error flag.
clearErrors() - Method in class ec.util.Output
clientPort - Variable in class ec.exchange.IslandExchange: The port of the client mailbox
Clique - Interface in ec: Clique is a class pattern marking classes which create only a few instances, generally accessible through some global mechanism, and every single one of which gets its own distinct setup(...) call.
clone() - Method in class ec.app.ant.Ant
clone() - Method in class ec.app.edge.Edge
clone() - Method in class ec.app.lawnmower.Lawnmower
clone() - Method in class ec.app.multiplexer.Multiplexer
clone() - Method in class ec.app.multiplexer.MultiplexerData
clone() - Method in class ec.app.multiplexerslow.Multiplexer
clone() - Method in class ec.app.parity.Parity
clone() - Method in class ec.app.regression.Regression
clone() - Method in class ec.app.twobox.TwoBox
clone() - Method in class ec.BreedingPipeline
clone() - Method in class ec.BreedingSource
clone() - Method in class ec.eval.MasterProblem
clone() - Method in class ec.Fitness
clone() - Method in class ec.gp.ADFContext
clone() - Method in class ec.gp.ADFStack
clone() - Method in class ec.gp.breed.InternalCrossoverPipeline
clone() - Method in class ec.gp.breed.MutateAllNodesPipeline
clone() - Method in class ec.gp.breed.MutateDemotePipeline
clone() - Method in class ec.gp.breed.MutateERCPipeline
clone() - Method in class ec.gp.breed.MutateOneNodePipeline
clone() - Method in class ec.gp.GPData
clone() - Method in class ec.gp.GPIndividual: Deep-clones the GPIndividual.
clone() - Method in class ec.gp.GPNode: Deep-clones the tree rooted at this node, and returns the entire copied tree.
clone() - Method in class ec.gp.GPNodeBuilder
clone() - Method in class ec.gp.GPProblem
clone() - Method in class ec.gp.GPTree: Deep-clones the tree.
clone() - Method in class ec.gp.koza.CrossoverPipeline
clone() - Method in class ec.gp.koza.KozaNodeSelector
clone() - Method in class ec.gp.koza.MutationPipeline
clone() - Method in class ec.Individual
clone() - Method in class ec.multiobjective.MultiObjectiveFitness
clone() - Method in class ec.Problem
clone() - Method in interface ec.Prototype: Creates a new individual cloned from a prototype, and suitable to begin use in its own evolutionary context.
clone() - Method in class ec.rule.breed.RuleCrossoverPipeline
clone() - Method in class ec.rule.Rule
clone() - Method in class ec.rule.RuleIndividual
clone() - Method in class ec.rule.RuleSet
clone() - Method in class ec.select.MultiSelection
clone() - Method in class ec.Species
clone() - Method in class ec.util.MersenneTwister
clone() - Method in class ec.util.MersenneTwisterFast
clone() - Method in class ec.vector.BitVectorIndividual
clone() - Method in class ec.vector.breed.VectorCrossoverPipeline
clone() - Method in class ec.vector.ByteVectorIndividual
clone() - Method in class ec.vector.DoubleVectorIndividual
clone() - Method in class ec.vector.FloatVectorIndividual
clone() - Method in class ec.vector.GeneVectorIndividual
clone() - Method in class ec.vector.IntegerVectorIndividual
clone() - Method in class ec.vector.LongVectorIndividual
clone() - Method in class ec.vector.ShortVectorIndividual
clone() - Method in class ec.vector.VectorGene
cloneReplacing() - Method in class ec.gp.GPNode: Deep-clones the tree rooted at this node, and returns the entire copied tree.
cloneReplacing(GPNode, GPNode) - Method in class ec.gp.GPNode: Deep-clones the tree rooted at this node, and returns the entire copied tree.
cloneReplacing(GPNode[], GPNode[]) - Method in class ec.gp.GPNode: Deep-clones the tree rooted at this node, and returns the entire copied tree.
cloneReplacingAtomic(GPNode, GPNode) - Method in class ec.gp.GPNode: Clones a new subtree, but with the single node oldNode (which may or may not be in the subtree) replaced with a newNode (not a clone of newNode).
cloneReplacingAtomic(GPNode[], GPNode[]) - Method in class ec.gp.GPNode: Clones a new subtree, but with each node in oldNodes[] respectively (which may or may not be in the subtree) replaced with the equivalent nodes in newNodes[] (and not clones).
cloneReplacingNoSubclone(GPNode, GPNode) - Method in class ec.gp.GPNode: Deep-clones the tree rooted at this node, and returns the entire copied tree.
close() - Method in class com.parabon.ec.logging.LoggerOutput: Closes all output logs.
close() - Method in interface ec.util.IOutput: Closes the logs -- ONLY call this if you are preparing to quit
close() - Method in class ec.util.Output
closeContacts(EvolutionState, int) - Method in class ec.eval.MasterProblem: Gracefully close contacts with the slaves
closeContacts(EvolutionState, int) - Method in class ec.Evaluator: Called to shut down remote evaluation network contacts when the run is completed.
closeContacts(EvolutionState, int) - Method in class ec.exchange.InterPopulationExchange: Closes contacts with other processes, if that's what you're doing.
closeContacts(EvolutionState, int) - Method in class ec.exchange.IslandExchange: Closes contacts with other processes, if that's what you're doing.
closeContacts(EvolutionState, int) - Method in class ec.Exchanger: Closes contacts with other processes, if that's what you're doing.
closeContacts(EvolutionState, int) - Method in class ec.Problem: Called to shut down remote evaluation network contacts when the run is completed.
closeContacts(EvolutionState, int) - Method in class ec.simple.SimpleExchanger: Doesn't do anything.
Code - Class in ec.util: Code provides some simple wrapper functions for encoding and decoding basic data types for storage in a pseudo-Java source code strings format.
Code() - Constructor for class ec.util.Code
CoevolutionaryRosenbrock - Class in ec.app.coevolve2
CoevolutionaryRosenbrock() - Constructor for class ec.app.coevolve2.CoevolutionaryRosenbrock
CollectionsParameterDatabase - Class in com.parabon.ec.util: IParameterDatabase implementation using Apache Commons Collection.
CollectionsParameterDatabase() - Constructor for class com.parabon.ec.util.CollectionsParameterDatabase: Creates an empty parameter database.
CollectionsParameterDatabase(String, Class) - Constructor for class com.parabon.ec.util.CollectionsParameterDatabase: Creates a new parameter database loaded from the given string describing a file in a jar, in the context of a resource location (a class).
CollectionsParameterDatabase(InputStream) - Constructor for class com.parabon.ec.util.CollectionsParameterDatabase: Creates a new parameter database loaded from the given stream.
CollectionsParameterDatabase(File) - Constructor for class com.parabon.ec.util.CollectionsParameterDatabase: Creates a new parameter database from a given database file.
com.parabon.ec - package com.parabon.ec
com.parabon.ec.logging - package com.parabon.ec.logging: Provides a drop-in replacement for ec.util.Output that uses Log4J for logging and output.
com.parabon.ec.simple - package com.parabon.ec.simple
com.parabon.ec.state - package com.parabon.ec.state
com.parabon.ec.steadystate - package com.parabon.ec.steadystate: Opportunistic Evolution state classes.
com.parabon.ec.util - package com.parabon.ec.util
compareTo(Object) - Method in class ec.rule.Rule: This function replaces the old gt and lt functions that Rule used to require as it implemented the SortComparator interface.
comparison - Variable in class ec.es.MuCommaLambdaBreeder
compatibleWith(GPInitializer, GPType) - Method in class ec.gp.GPAtomicType
compatibleWith(GPInitializer, GPType) - Method in class ec.gp.GPSetType
compatibleWith(GPInitializer, GPType) - Method in class ec.gp.GPType: Am I compatible with ("fit" with) t? For two atomic types, this is done by direct pointer equality.
competeStyle - Static variable in class ec.coevolve.CompetitiveEvaluator
CompetitiveEvaluator - Class in ec.coevolve: CompetitiveEvaluator.java
CompetitiveEvaluator() - Constructor for class ec.coevolve.CompetitiveEvaluator
CompetitiveMaxOne - Class in ec.app.coevolve1
CompetitiveMaxOne() - Constructor for class ec.app.coevolve1.CompetitiveMaxOne
compressedCommunication - Variable in class ec.exchange.IslandExchange: whether the communication is compressed or not
CompressingInputStream - Class in ec.util: CompressingInputStream and CompressingOutputStream allow you to perform compression on a stream, and flush it, and continue to use it.
CompressingInputStream(InputStream) - Constructor for class ec.util.CompressingInputStream
CompressingInputStream(InputStream, boolean) - Constructor for class ec.util.CompressingInputStream
CompressingOutputStream - Class in ec.util: CompressingInputStream and DecompressingOutputStream allow you to perform compression on a stream, and flush it, and continue to use it.
CompressingOutputStream(OutputStream) - Constructor for class ec.util.CompressingOutputStream
CompressingOutputStream(OutputStream, int, boolean) - Constructor for class ec.util.CompressingOutputStream
computeNonterminalSelectionProbabilities(int) - Method in class ec.gp.build.PTCFunctionSet
computePercentages() - Method in class ec.gp.build.Uniform
constraintNumber - Variable in class ec.gp.GPNodeConstraints: The byte value of the constraints -- we can only have 256 of them
constraintNumber - Variable in class ec.gp.GPTreeConstraints: The byte value of the constraints -- we can only have 256 of them
constraintNumber - Variable in class ec.rule.RuleConstraints: The byte value of the constraints -- we can only have 256 of them
constraintNumber - Variable in class ec.rule.RuleSetConstraints: The byte value of the constraints -- we can only have 256 of them
constraints - Variable in class ec.gp.GPNode: The GPNode's constraints.
constraints(GPInitializer) - Method in class ec.gp.GPNode
constraints - Variable in class ec.gp.GPTree: constraints on the GPTree -- don't access the constraints through this variable -- use the constraints() method instead, which will give the actual constraints object.
constraints(GPInitializer) - Method in class ec.gp.GPTree
constraints - Variable in class ec.rule.Rule: An index to a RuleConstraints
constraints(RuleInitializer) - Method in class ec.rule.Rule
constraints - Variable in class ec.rule.RuleSet: An index to a RuleSetConstraints
constraints(RuleInitializer) - Method in class ec.rule.RuleSet
constraintsFor(String, EvolutionState) - Static method in class ec.gp.GPNodeConstraints: You must guarantee that after calling constraintsFor(...) one or several times, you call state.output.exitIfErrors() once.
constraintsFor(String, EvolutionState) - Static method in class ec.gp.GPTreeConstraints: You must guarantee that after calling constraintsFor(...) one or several times, you call state.output.exitIfErrors() once.
constraintsFor(String, EvolutionState) - Static method in class ec.rule.RuleConstraints: You must guarantee that after calling constraintsFor(...) one or several times, you call state.output.exitIfErrors() once.
constraintsFor(String, EvolutionState) - Static method in class ec.rule.RuleSetConstraints: You must guarantee that after calling constraintsFor(...) one or several times, you call state.output.exitIfErrors() once.
contains(GPNode) - Method in class ec.gp.GPNode: Returns true if the subtree rooted at this node contains subnode.
context_ - Variable in class ec.EvolutionState: Used for Frontier remote task execution context.
context_proto - Variable in class ec.gp.ADFStack
contributors - Static variable in class ec.util.Version
contributors2 - Static variable in class ec.util.Version
copyNoClone(RuleSet) - Method in class ec.rule.RuleSet: Clears out existing rules, and loads the rules from the other ruleset without protocloning them.
copyright - Static variable in class com.parabon.ec.util.Version
copyright - Static variable in class ec.util.Version
copyTo(GPData) - Method in class ec.app.ant.AntData
copyTo(GPData) - Method in class ec.app.edge.EdgeData
copyTo(GPData) - Method in class ec.app.lawnmower.LawnmowerData
copyTo(GPData) - Method in class ec.app.multiplexer.MultiplexerData
copyTo(GPData) - Method in class ec.app.multiplexerslow.MultiplexerData
copyTo(GPData) - Method in class ec.app.parity.ParityData
copyTo(GPData) - Method in class ec.app.regression.RegressionData
copyTo(GPData) - Method in class ec.app.twobox.TwoBoxData
copyTo(GPData) - Method in class ec.gp.GPData: Modifies gpd so that gpd is equivalent to us.
Cos - Class in ec.app.regression.func
Cos() - Constructor for class ec.app.regression.func.Cos
count - Variable in class ec.es.MuCommaLambdaBreeder: Modified by multiple threads, don't fool with this
countVictoriesOnly - Variable in class ec.eval.Job
Cr - Variable in class ec.de.Rand1ExpDEBreeder
createEvolutionState(String[]) - Method in class com.parabon.ec.Evolve: Creates the evolution state for this evolve object from command line arguments.
createEvolutionState() - Method in class com.parabon.ec.Evolve
createIndividual(EvolutionState, int, Individual[], int, int) - Method in class ec.de.Best1BinDEBreeder
createIndividual(EvolutionState, int, Individual[], int, int) - Method in class ec.de.DEBreeder
createIndividual(EvolutionState, int, Individual[], int, int) - Method in class ec.de.Rand1EitherOrDEBreeder
createIndividual(EvolutionState, int, Individual[], int, int) - Method in class ec.de.Rand1ExpDEBreeder
CrossoverPipeline - Class in ec.gp.koza: CrossoverPipeline is a GPBreedingPipeline which performs a strongly-typed version of Koza-style "Subtree Crossover".
CrossoverPipeline() - Constructor for class ec.gp.koza.CrossoverPipeline
crossoverProbability - Variable in class ec.vector.VectorSpecies: Probability that a gene will cross over -- ONLY used in V_ANY_POINT crossover
crossoverType - Variable in class ec.vector.VectorSpecies: What kind of crossover do we have?
currentIndex - Variable in class ec.app.twobox.TwoBox
currentJavaVersion - Static variable in class com.parabon.ec.util.Version
currentSize - Variable in class ec.breed.BufferedBreedingPipeline
currentValue - Variable in class ec.app.regression.Regression

D

d - Variable in class ec.util.DecodeReturn: Stores floats, doubles
D0 - Class in ec.app.multiplexer.func
D0() - Constructor for class ec.app.multiplexer.func.D0
D0 - Class in ec.app.multiplexerslow.func
D0() - Constructor for class ec.app.multiplexerslow.func.D0
D0 - Class in ec.app.parity.func
D0() - Constructor for class ec.app.parity.func.D0
D1 - Class in ec.app.multiplexer.func
D1() - Constructor for class ec.app.multiplexer.func.D1
D1 - Class in ec.app.multiplexerslow.func
D1() - Constructor for class ec.app.multiplexerslow.func.D1
D1 - Class in ec.app.parity.func
D1() - Constructor for class ec.app.parity.func.D1
D10 - Class in ec.app.parity.func
D10() - Constructor for class ec.app.parity.func.D10
D11 - Class in ec.app.parity.func
D11() - Constructor for class ec.app.parity.func.D11
D12 - Class in ec.app.parity.func
D12() - Constructor for class ec.app.parity.func.D12
D13 - Class in ec.app.parity.func
D13() - Constructor for class ec.app.parity.func.D13
D14 - Class in ec.app.parity.func
D14() - Constructor for class ec.app.parity.func.D14
D15 - Class in ec.app.parity.func
D15() - Constructor for class ec.app.parity.func.D15
D16 - Class in ec.app.parity.func
D16() - Constructor for class ec.app.parity.func.D16
D17 - Class in ec.app.parity.func
D17() - Constructor for class ec.app.parity.func.D17
D18 - Class in ec.app.parity.func
D18() - Constructor for class ec.app.parity.func.D18
D19 - Class in ec.app.parity.func
D19() - Constructor for class ec.app.parity.func.D19
D2 - Class in ec.app.multiplexer.func
D2() - Constructor for class ec.app.multiplexer.func.D2
D2 - Class in ec.app.multiplexerslow.func
D2() - Constructor for class ec.app.multiplexerslow.func.D2
D2 - Class in ec.app.parity.func
D2() - Constructor for class ec.app.parity.func.D2
D20 - Class in ec.app.parity.func
D20() - Constructor for class ec.app.parity.func.D20
D21 - Class in ec.app.parity.func
D21() - Constructor for class ec.app.parity.func.D21
D22 - Class in ec.app.parity.func
D22() - Constructor for class ec.app.parity.func.D22
D23 - Class in ec.app.parity.func
D23() - Constructor for class ec.app.parity.func.D23
D24 - Class in ec.app.parity.func
D24() - Constructor for class ec.app.parity.func.D24
D25 - Class in ec.app.parity.func
D25() - Constructor for class ec.app.parity.func.D25
D26 - Class in ec.app.parity.func
D26() - Constructor for class ec.app.parity.func.D26
D27 - Class in ec.app.parity.func
D27() - Constructor for class ec.app.parity.func.D27
D28 - Class in ec.app.parity.func
D28() - Constructor for class ec.app.parity.func.D28
D29 - Class in ec.app.parity.func
D29() - Constructor for class ec.app.parity.func.D29
D3 - Class in ec.app.multiplexer.func
D3() - Constructor for class ec.app.multiplexer.func.D3
D3 - Class in ec.app.multiplexerslow.func
D3() - Constructor for class ec.app.multiplexerslow.func.D3
D3 - Class in ec.app.parity.func
D3() - Constructor for class ec.app.parity.func.D3
D30 - Class in ec.app.parity.func
D30() - Constructor for class ec.app.parity.func.D30
D31 - Class in ec.app.parity.func
D31() - Constructor for class ec.app.parity.func.D31
D4 - Class in ec.app.multiplexer.func
D4() - Constructor for class ec.app.multiplexer.func.D4
D4 - Class in ec.app.multiplexerslow.func
D4() - Constructor for class ec.app.multiplexerslow.func.D4
D4 - Class in ec.app.parity.func
D4() - Constructor for class ec.app.parity.func.D4
D5 - Class in ec.app.multiplexer.func
D5() - Constructor for class ec.app.multiplexer.func.D5
D5 - Class in ec.app.multiplexerslow.func
D5() - Constructor for class ec.app.multiplexerslow.func.D5
D5 - Class in ec.app.parity.func
D5() - Constructor for class ec.app.parity.func.D5
D6 - Class in ec.app.multiplexer.func
D6() - Constructor for class ec.app.multiplexer.func.D6
D6 - Class in ec.app.multiplexerslow.func
D6() - Constructor for class ec.app.multiplexerslow.func.D6
D6 - Class in ec.app.parity.func
D6() - Constructor for class ec.app.parity.func.D6
D7 - Class in ec.app.multiplexer.func
D7() - Constructor for class ec.app.multiplexer.func.D7
D7 - Class in ec.app.multiplexerslow.func
D7() - Constructor for class ec.app.multiplexerslow.func.D7
D7 - Class in ec.app.parity.func
D7() - Constructor for class ec.app.parity.func.D7
D8 - Class in ec.app.parity.func
D8() - Constructor for class ec.app.parity.func.D8
D9 - Class in ec.app.parity.func
D9() - Constructor for class ec.app.parity.func.D9
D_STDERR - Static variable in class ec.util.Log: Specifies that the log should write to stderr (System.err)
D_STDOUT - Static variable in class ec.util.Log: Specifies that the log should write to stdout (System.out)
dat_11 - Variable in class ec.app.multiplexer.MultiplexerData: An array of 32 longs for Multiplexer-11 data
dat_3 - Variable in class ec.app.multiplexer.MultiplexerData: A byte for Multiplexer-3 data
dat_6 - Variable in class ec.app.multiplexer.MultiplexerData: A long for Multiplexer-6 data
data - Variable in class ec.gp.GPProblem: The GPProblems' GPData
data - Variable in class ec.util.DecodeReturn: The DecodeReturn string that's read from.
dataPart - Variable in class ec.app.multiplexerslow.Multiplexer
DataPipe - Class in ec.eval
DataPipe() - Constructor for class ec.eval.DataPipe
DataPipe - Class in ec.util
DataPipe() - Constructor for class ec.util.DataPipe
date - Static variable in class ec.util.Version
DEBreeder - Class in ec.de: DEBreeder provides a straightforward Differential Evolution (DE) breeder for the ECJ system.
DEBreeder() - Constructor for class ec.de.DEBreeder
decode(DecodeReturn) - Method in class ec.app.lawnmower.func.LawnERC
decode(DecodeReturn) - Method in class ec.app.regression.func.RegERC
decode(DecodeReturn) - Method in class ec.gp.ERC: Decodes data into the ERC from dret.
decode(DecodeReturn) - Static method in class ec.util.Code: Decodes the next item out of a DecodeReturn and modifies the DecodeReturn to hold the results.
DecodeReturn - Class in ec.util: DecodeReturn is used by Code to provide varied information returned when decoding.
DecodeReturn(String) - Constructor for class ec.util.DecodeReturn: Use this to make a new DecodeReturn starting at position 0
DecodeReturn(String, int) - Constructor for class ec.util.DecodeReturn: Use this to make a new DecodeReturn starting at some position
DEFAULT_PROBABILITY - Static variable in class ec.gp.GPNodeConstraints
DEFAULT_PRODUCED - Static variable in class ec.BreedingSource
DEFAULT_SIZE - Static variable in class ec.parsimony.BucketTournamentSelection: Default size
DEFAULT_SIZE - Static variable in class ec.parsimony.DoubleTournamentSelection
DEFAULT_SIZE - Static variable in class ec.parsimony.LexicographicTournamentSelection: Default size
DEFAULT_SIZE - Static variable in class ec.parsimony.ProportionalTournamentSelection: Default size
DEFAULT_SIZE - Static variable in class ec.parsimony.RatioBucketTournamentSelection: Default size
DEFAULT_SIZE - Static variable in class ec.select.TournamentSelection
DEFAULT_SPECIES - Static variable in class ec.vector.VectorIndividual
defaultBase() - Method in class ec.app.sum.Sum
defaultBase() - Method in class ec.breed.BufferedBreedingPipeline
defaultBase() - Method in class ec.breed.ForceBreedingPipeline
defaultBase() - Method in class ec.breed.GenerationSwitchPipeline
defaultBase() - Method in class ec.breed.MultiBreedingPipeline
defaultBase() - Method in class ec.breed.ReproductionPipeline
defaultBase() - Method in class ec.es.ESSelection
defaultBase() - Method in class ec.gp.ADF
defaultBase() - Method in class ec.gp.ADFArgument
defaultBase() - Method in class ec.gp.ADFContext
defaultBase() - Method in class ec.gp.ADFStack
defaultBase() - Method in class ec.gp.breed.InternalCrossoverPipeline
defaultBase() - Method in class ec.gp.breed.MutateAllNodesPipeline
defaultBase() - Method in class ec.gp.breed.MutateDemotePipeline
defaultBase() - Method in class ec.gp.breed.MutateERCPipeline
defaultBase() - Method in class ec.gp.breed.MutateOneNodePipeline
defaultBase() - Method in class ec.gp.breed.MutatePromotePipeline
defaultBase() - Method in class ec.gp.breed.MutateSwapPipeline
defaultBase() - Method in class ec.gp.breed.RehangPipeline
defaultBase() - Method in class ec.gp.build.PTC1
defaultBase() - Method in class ec.gp.build.PTC2
defaultBase() - Method in class ec.gp.build.RandomBranch
defaultBase() - Method in class ec.gp.build.RandTree
defaultBase() - Method in class ec.gp.build.Uniform
defaultBase() - Method in class ec.gp.GPData
defaultBase() - Method in class ec.gp.GPIndividual
defaultBase() - Method in class ec.gp.GPNode: The default base for GPNodes -- defined even though GPNode is abstract so you don't have to in subclasses.
defaultBase() - Method in class ec.gp.GPProblem: GPProblem defines a default base so your subclass doesn't absolutely have to.
defaultBase() - Method in class ec.gp.GPSpecies
defaultBase() - Method in class ec.gp.GPTree
defaultBase() - Method in class ec.gp.koza.CrossoverPipeline
defaultBase() - Method in class ec.gp.koza.FullBuilder
defaultBase() - Method in class ec.gp.koza.GrowBuilder
defaultBase() - Method in class ec.gp.koza.HalfBuilder
defaultBase() - Method in class ec.gp.koza.KozaFitness
defaultBase() - Method in class ec.gp.koza.KozaNodeSelector
defaultBase() - Method in class ec.gp.koza.MutationPipeline
defaultBase() - Method in class ec.multiobjective.MultiObjectiveFitness
defaultBase() - Method in class ec.parsimony.BucketTournamentSelection
defaultBase() - Method in class ec.parsimony.DoubleTournamentSelection
defaultBase() - Method in class ec.parsimony.LexicographicTournamentSelection
defaultBase() - Method in class ec.parsimony.ProportionalTournamentSelection
defaultBase() - Method in class ec.parsimony.RatioBucketTournamentSelection
defaultBase() - Method in class ec.Problem: Here's a nice default base for you -- you can change it if you like
defaultBase() - Method in interface ec.Prototype: Returns the default base for this prototype.
defaultBase() - Method in class ec.rule.breed.RuleCrossoverPipeline
defaultBase() - Method in class ec.rule.breed.RuleMutationPipeline
defaultBase() - Method in class ec.rule.Rule
defaultBase() - Method in class ec.rule.RuleIndividual
defaultBase() - Method in class ec.rule.RuleSet
defaultBase() - Method in class ec.rule.RuleSpecies
defaultBase() - Method in class ec.select.BestSelection
defaultBase() - Method in class ec.select.FirstSelection
defaultBase() - Method in class ec.select.FitProportionateSelection
defaultBase() - Method in class ec.select.GreedyOverselection
defaultBase() - Method in class ec.select.MultiSelection
defaultBase() - Method in class ec.select.RandomSelection
defaultBase() - Method in class ec.select.TournamentSelection
defaultBase() - Method in class ec.simple.SimpleFitness
defaultBase() - Method in class ec.spatial.SpatialTournamentSelection
defaultBase() - Method in class ec.vector.BitVectorIndividual
defaultBase() - Method in class ec.vector.breed.VectorCrossoverPipeline
defaultBase() - Method in class ec.vector.breed.VectorMutationPipeline
defaultBase() - Method in class ec.vector.ByteVectorIndividual
defaultBase() - Method in class ec.vector.DoubleVectorIndividual
defaultBase() - Method in class ec.vector.FloatVectorIndividual
defaultBase() - Method in class ec.vector.GeneVectorIndividual
defaultBase() - Method in class ec.vector.IntegerVectorIndividual
defaultBase() - Method in class ec.vector.LongVectorIndividual
defaultBase() - Method in class ec.vector.ShortVectorIndividual
defaultBase() - Method in class ec.vector.VectorGene
defaultBase() - Method in class ec.vector.VectorSpecies
defaultCrossover(EvolutionState, int, VectorIndividual) - Method in class ec.vector.BitVectorIndividual
defaultCrossover(EvolutionState, int, VectorIndividual) - Method in class ec.vector.ByteVectorIndividual
defaultCrossover(EvolutionState, int, VectorIndividual) - Method in class ec.vector.DoubleVectorIndividual
defaultCrossover(EvolutionState, int, VectorIndividual) - Method in class ec.vector.FloatVectorIndividual
defaultCrossover(EvolutionState, int, VectorIndividual) - Method in class ec.vector.GeneVectorIndividual
defaultCrossover(EvolutionState, int, VectorIndividual) - Method in class ec.vector.IntegerVectorIndividual
defaultCrossover(EvolutionState, int, VectorIndividual) - Method in class ec.vector.LongVectorIndividual
defaultCrossover(EvolutionState, int, VectorIndividual) - Method in class ec.vector.ShortVectorIndividual
defaultCrossover(EvolutionState, int, VectorIndividual) - Method in class ec.vector.VectorIndividual: Destructively crosses over the individual with another in some default manner.
defaultMutate(EvolutionState, int) - Method in class ec.vector.BitVectorIndividual: Destructively mutates the individual in some default manner.
defaultMutate(EvolutionState, int) - Method in class ec.vector.ByteVectorIndividual: Destructively mutates the individual in some default manner.
defaultMutate(EvolutionState, int) - Method in class ec.vector.DoubleVectorIndividual: Destructively mutates the individual in some default manner.
defaultMutate(EvolutionState, int) - Method in class ec.vector.FloatVectorIndividual: Destructively mutates the individual in some default manner.
defaultMutate(EvolutionState, int) - Method in class ec.vector.GeneVectorIndividual: Destructively mutates the individual in some default manner.
defaultMutate(EvolutionState, int) - Method in class ec.vector.IntegerVectorIndividual: Destructively mutates the individual in some default manner.
defaultMutate(EvolutionState, int) - Method in class ec.vector.LongVectorIndividual: Destructively mutates the individual in some default manner.
defaultMutate(EvolutionState, int) - Method in class ec.vector.ShortVectorIndividual: Destructively mutates the individual in some default manner.
defaultMutate(EvolutionState, int) - Method in class ec.vector.VectorIndividual: Destructively mutates the individual in some default manner.
DefaultsForm - Interface in ec: DefaultsForm is the interface which describes how Defaults objects should work.
delimiter - Static variable in class ec.util.Parameter
depth() - Method in class ec.gp.GPNode: Returns the depth of the tree, which is a value >= 1.
describe(Individual, EvolutionState, int, int, int) - Method in class ec.app.ant.Ant
describe(Individual, EvolutionState, int, int, int) - Method in class ec.app.ecsuite.ECSuite
describe(Individual, EvolutionState, int, int, int, int) - Method in class ec.app.ecsuite.ECSuite
describe(Individual, EvolutionState, int, int, int) - Method in class ec.app.edge.Edge
describe(Individual, EvolutionState, int, int, int) - Method in class ec.app.lawnmower.Lawnmower
describe(Individual, EvolutionState, int, int, int) - Method in class ec.app.sum.Sum
describe(Individual, EvolutionState, int, int, int) - Method in class ec.eval.MasterProblem
describe(Individual, EvolutionState, int, int, int, int) - Method in class ec.eval.MasterProblem
describe(Individual, EvolutionState, int, int, int, int) - Method in class ec.gp.GPProblem
describe(Individual, EvolutionState, int, int, int) - Method in class ec.Problem: Deprecated.
describe(Individual, EvolutionState, int, int, int, int) - Method in class ec.Problem
describe(Individual, EvolutionState, int, int, int, int) - Method in interface ec.simple.SimpleProblemForm: "Reevaluates" an individual, for the purpose of printing out interesting facts about the individual in the context of the Problem, and logs the results.
describe(Individual, EvolutionState, int, int, int) - Method in interface ec.simple.SimpleProblemForm: Deprecated.
describeShortGeneralized(Individual, EvolutionState, int) - Method in class ec.app.edge.Edge
deselectors - Variable in class ec.steadystate.SteadyStateBreeder: Loaded during the first iteration of breedPopulation
DEStatistics - Class in ec.de: DEStatistics provides a straightforward solution to one problem many existing ECJ statistics classes have when used in conjunction with Differential Evolution (DE), namely reporting the fitness of individuals after they have been evaluated.
DEStatistics() - Constructor for class ec.de.DEStatistics
determineSeed(IOutput, IParameterDatabase, Parameter, long, int) - Static method in class ec.Evolve: Loads a random generator seed.
didFlush_ - Variable in class com.parabon.ec.steadystate.SteadyStateEvolutionState: Ensure that the entire initial population is launched.
DirectLayout - Class in com.parabon.ec.logging: Logs messages with no formatting.
DirectLayout() - Constructor for class com.parabon.ec.logging.DirectLayout: Constructs layout
directoryFor(Parameter) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Finds the directory containing the parameter file that defines this parameter.
directoryFor(Parameter) - Method in interface ec.util.IParameterDatabase: Searches down through databases to find the directory for the database which holds a given parameter.
directoryFor(Parameter) - Method in class ec.util.ParameterDatabase: Searches down through databases to find the directory for the database which holds a given parameter.
Div - Class in ec.app.regression.func
Div() - Constructor for class ec.app.regression.func.Div
Div - Class in ec.app.twobox.func
Div() - Constructor for class ec.app.twobox.func.Div
dmax - Variable in class ec.app.multiplexerslow.Multiplexer
doEven - Variable in class ec.app.parity.Parity
doFull - Variable in class ec.gp.koza.KozaShortStatistics
doFull - Variable in class ec.simple.SimpleShortStatistics
doLengthFirst - Variable in class ec.parsimony.DoubleTournamentSelection
doReadObject(ObjectInputStream) - Method in class ec.eval.MasterProblem: Custom serialization
Double - Class in ec.app.edge.func
Double() - Constructor for class ec.app.edge.func.Double
DoubleTournamentSelection - Class in ec.parsimony
DoubleTournamentSelection() - Constructor for class ec.parsimony.DoubleTournamentSelection
DoubleVectorIndividual - Class in ec.vector: DoubleVectorIndividual is a VectorIndividual whose genome is an array of doubles.
DoubleVectorIndividual() - Constructor for class ec.vector.DoubleVectorIndividual
doWriteObject(ObjectOutputStream) - Method in class ec.eval.MasterProblem: Custom serialization
DummyStatistics - Class in com.parabon.ec: This is a dummy object whose methods do nothing.
DummyStatistics() - Constructor for class com.parabon.ec.DummyStatistics
DYNAMIC_SOURCES - Static variable in class ec.BreedingPipeline: Indicates that the number of sources is variable and determined by the user in the parameter file.

E

ec - package ec
ec.app.ant - package ec.app.ant
ec.app.ant.func - package ec.app.ant.func
ec.app.coevolve1 - package ec.app.coevolve1
ec.app.coevolve2 - package ec.app.coevolve2
ec.app.ecsuite - package ec.app.ecsuite
ec.app.edge - package ec.app.edge
ec.app.edge.func - package ec.app.edge.func
ec.app.lawnmower - package ec.app.lawnmower
ec.app.lawnmower.func - package ec.app.lawnmower.func
ec.app.multiplexer - package ec.app.multiplexer: The Koza-I Boolean-Multiplexer problem.
ec.app.multiplexer.func - package ec.app.multiplexer.func
ec.app.multiplexerslow - package ec.app.multiplexerslow: The original ECJ implementation of the Koza-I Boolean-Multiplexer problem.
ec.app.multiplexerslow.func - package ec.app.multiplexerslow.func
ec.app.parity - package ec.app.parity
ec.app.parity.func - package ec.app.parity.func
ec.app.regression - package ec.app.regression
ec.app.regression.func - package ec.app.regression.func
ec.app.sum - package ec.app.sum
ec.app.twobox - package ec.app.twobox
ec.app.twobox.func - package ec.app.twobox.func
ec.breed - package ec.breed
ec.coevolve - package ec.coevolve
ec.de - package ec.de: Differential Evolution Algorithms.
ec.es - package ec.es
ec.eval - package ec.eval
ec.exchange - package ec.exchange
ec.gp - package ec.gp
ec.gp.breed - package ec.gp.breed
ec.gp.build - package ec.gp.build
ec.gp.koza - package ec.gp.koza
ec.multiobjective - package ec.multiobjective
ec.multiobjective.spea2 - package ec.multiobjective.spea2: Strength Pareto Evolutionary Algorithm implementation.
ec.parsimony - package ec.parsimony
ec.pso - package ec.pso
ec.rule - package ec.rule
ec.rule.breed - package ec.rule.breed
ec.select - package ec.select
ec.simple - package ec.simple
ec.spatial - package ec.spatial
ec.steadystate - package ec.steadystate
ec.util - package ec.util
ec.vector - package ec.vector
ec.vector.breed - package ec.vector.breed
ECDefaults - Class in ec
ECDefaults() - Constructor for class ec.ECDefaults
ECSuite - Class in ec.app.ecsuite: Several standard Evolutionary Computation functions are implemented: Rastrigin, De Jong's test suite F1-F4 problems (Sphere, Rosenbrock, Step, Noisy-Quartic), Booth (from [Schwefel, 1995]), and Griewangk.
ECSuite() - Constructor for class ec.app.ecsuite.ECSuite
Edge - Class in ec.app.edge: Edge implements the Symbolic Edge problem.
Edge() - Constructor for class ec.app.edge.Edge
edge - Variable in class ec.app.edge.EdgeData
EdgeData - Class in ec.app.edge
EdgeData() - Constructor for class ec.app.edge.EdgeData
EdgeShortStatistics - Class in ec.app.edge
EdgeShortStatistics() - Constructor for class ec.app.edge.EdgeShortStatistics
EdgeStatistics - Class in ec.app.edge
EdgeStatistics() - Constructor for class ec.app.edge.EdgeStatistics
elite - Variable in class ec.simple.SimpleBreeder: An array[subpop] of the number of elites to keep for that subpopulation
EMPTY - Static variable in class ec.app.ant.Ant
emptyClone() - Method in interface ec.Group: Returns a copy of the object just as it had been immediately after Setup was called on it (or on an ancestor object).
emptyClone() - Method in class ec.Population: Returns an instance of Population just like it had been before it was populated with individuals.
emptyClone() - Method in class ec.Subpopulation: Returns an instance of Subpopulation just like it had been before it was populated with individuals.
encode() - Method in class ec.app.lawnmower.func.LawnERC
encode() - Method in class ec.app.regression.func.RegERC
encode() - Method in class ec.gp.ERC: Encodes data from the ERC, using ec.util.Code.
encode(boolean) - Static method in class ec.util.Code: Encodes a boolean.
encode(byte) - Static method in class ec.util.Code: Encodes a byte.
encode(char) - Static method in class ec.util.Code: Encodes a character.
encode(short) - Static method in class ec.util.Code: Encodes a short.
encode(int) - Static method in class ec.util.Code: Encodes an int.
encode(long) - Static method in class ec.util.Code: Encodes a long.
encode(float) - Static method in class ec.util.Code: Encodes a float.
encode(double) - Static method in class ec.util.Code: Encodes a double.
encode(String) - Static method in class ec.util.Code: Encodes a String.
EPSILON - Static variable in class ec.app.edge.Edge
epsilon - Variable in class ec.app.edge.Edge
Epsilon - Class in ec.app.edge.func
Epsilon() - Constructor for class ec.app.edge.func.Epsilon
epsilon_l - Variable in class ec.app.edge.Edge
equals(Object) - Method in class ec.gp.GPIndividual
equals(Object) - Method in class ec.Individual: Returns true if I am genetically "equal" to ind.
equals(Object) - Method in class ec.rule.Rule: Unlike the standard form for Java, this function should return true if this rule is "genetically identical" to the other rule.
equals(Object) - Method in class ec.rule.RuleIndividual
equals(Object) - Method in class ec.rule.RuleSet
equals(Object) - Method in class ec.util.ReflectedObject
equals(Object) - Method in class ec.vector.BitVectorIndividual
equals(Object) - Method in class ec.vector.ByteVectorIndividual
equals(Object) - Method in class ec.vector.DoubleVectorIndividual
equals(Object) - Method in class ec.vector.FloatVectorIndividual
equals(Object) - Method in class ec.vector.GeneVectorIndividual
equals(Object) - Method in class ec.vector.IntegerVectorIndividual
equals(Object) - Method in class ec.vector.LongVectorIndividual
equals(Object) - Method in class ec.vector.ShortVectorIndividual
equals(Object) - Method in class ec.vector.VectorGene: Unlike the standard form for Java, this function should return true if this gene is "genetically identical" to the other gene.
equivalentTo(Fitness) - Method in class ec.Fitness: Should return true if this fitness is in the same equivalence class as _fitness, that is, neither is clearly better or worse than the other.
equivalentTo(Fitness) - Method in class ec.gp.koza.KozaFitness
equivalentTo(Fitness) - Method in class ec.multiobjective.MultiObjectiveFitness: Returns true if I'm equivalent in fitness (neither better nor worse) to _fitness.
equivalentTo(Fitness) - Method in class ec.simple.SimpleFitness
ERC - Class in ec.gp: ERC is an abstract GPNode which implements Ephemeral Random Constants, as described in Koza I.
ERC() - Constructor for class ec.gp.ERC
ERC_PREFIX - Static variable in class ec.gp.ERC
error(String) - Method in class com.parabon.ec.logging.LoggerOutput: Logs error message to root logger.
error(String, Parameter) - Method in class com.parabon.ec.logging.LoggerOutput
error(String, Parameter, Parameter) - Method in class com.parabon.ec.logging.LoggerOutput
ERROR - Static variable in class ec.app.ant.Ant
error(String) - Method in interface ec.util.IOutput: Posts a simple error.
error(String, Parameter) - Method in interface ec.util.IOutput: Posts a simple error.
error(String, Parameter, Parameter) - Method in interface ec.util.IOutput: Posts a simple error.
error(String) - Method in class ec.util.Output
error(String, Parameter) - Method in class ec.util.Output
error(String, Parameter, Parameter) - Method in class ec.util.Output
errorAboutNoNodeWithType(GPType, EvolutionState) - Method in class ec.gp.GPNodeBuilder: Issues a fatal error that no node (nonterminal or terminal) was found with a return type of the given type, and that an algorithm had requested one.
errorInfo() - Method in class ec.gp.GPNode: A convenience function for identifying a GPNode in an error message
ESDefaults - Class in ec.es
ESDefaults() - Constructor for class ec.es.ESDefaults
ESSelection - Class in ec.es: ESSelection is a special SelectionMethod designed to be used with evolutionary strategies-type breeders.
ESSelection() - Constructor for class ec.es.ESSelection
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.ant.func.IfFoodAhead
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.ant.func.Left
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.ant.func.Move
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.ant.func.Progn2
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.ant.func.Progn3
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.ant.func.Progn4
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.ant.func.Right
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.edge.func.Accept
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.edge.func.BAccept
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.edge.func.BBud
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.edge.func.BLoop
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.edge.func.BStart
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.edge.func.Bud
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.edge.func.Double
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.edge.func.Epsilon
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.edge.func.Loop
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.edge.func.One
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.edge.func.Reverse
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.edge.func.Split
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.edge.func.Start
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.edge.func.Zero
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.lawnmower.func.Frog
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.lawnmower.func.LawnERC
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.lawnmower.func.Left
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.lawnmower.func.Mow
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.lawnmower.func.Progn2
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.lawnmower.func.V8a
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.multiplexer.func.A0
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.multiplexer.func.A1
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.multiplexer.func.A2
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.multiplexer.func.And
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.multiplexer.func.D0
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.multiplexer.func.D1
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.multiplexer.func.D2
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.multiplexer.func.D3
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.multiplexer.func.D4
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.multiplexer.func.D5
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.multiplexer.func.D6
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.multiplexer.func.D7
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.multiplexer.func.If
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.multiplexer.func.Not
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.multiplexer.func.Or
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.multiplexerslow.func.A0
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.multiplexerslow.func.A1
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.multiplexerslow.func.A2
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.multiplexerslow.func.And
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.multiplexerslow.func.D0
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.multiplexerslow.func.D1
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.multiplexerslow.func.D2
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.multiplexerslow.func.D3
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.multiplexerslow.func.D4
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.multiplexerslow.func.D5
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.multiplexerslow.func.D6
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.multiplexerslow.func.D7
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.multiplexerslow.func.If
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.multiplexerslow.func.Not
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.multiplexerslow.func.Or
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.parity.func.And
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.parity.func.D0
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.parity.func.D1
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.parity.func.D10
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.parity.func.D11
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.parity.func.D12
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.parity.func.D13
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.parity.func.D14
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.parity.func.D15
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.parity.func.D16
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.parity.func.D17
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.parity.func.D18
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.parity.func.D19
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.parity.func.D2
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.parity.func.D20
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.parity.func.D21
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.parity.func.D22
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.parity.func.D23
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.parity.func.D24
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.parity.func.D25
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.parity.func.D26
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.parity.func.D27
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.parity.func.D28
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.parity.func.D29
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.parity.func.D3
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.parity.func.D30
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.parity.func.D31
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.parity.func.D4
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.parity.func.D5
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.parity.func.D6
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.parity.func.D7
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.parity.func.D8
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.parity.func.D9
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.parity.func.Nand
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.parity.func.Nor
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.parity.func.Or
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.regression.func.Add
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.regression.func.Cos
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.regression.func.Div
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.regression.func.Exp
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.regression.func.Log
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.regression.func.Mul
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.regression.func.RegERC
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.regression.func.Sin
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.regression.func.Sub
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.regression.func.X
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.twobox.func.Add
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.twobox.func.Div
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.twobox.func.H0
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.twobox.func.H1
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.twobox.func.L0
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.twobox.func.L1
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.twobox.func.Mul
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.twobox.func.Sub
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.twobox.func.W0
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.app.twobox.func.W1
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.gp.ADF
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.gp.ADFArgument
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.gp.ADM
eval(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem) - Method in class ec.gp.GPNode: Evaluates the node with the given thread, state, individual, problem, and stack.
evalNRandomOneWay(EvolutionState, int[], int[], Individual[], GroupedProblemForm) - Method in class ec.coevolve.CompetitiveEvaluator
evalNRandomOneWayPopChunk(EvolutionState, int, int, int, Individual[], GroupedProblemForm) - Method in class ec.coevolve.CompetitiveEvaluator
evalNRandomTwoWay(EvolutionState, int[], int[], Individual[], GroupedProblemForm) - Method in class ec.coevolve.CompetitiveEvaluator
evalNRandomTwoWayPopChunk(EvolutionState, int, int, int, Individual[], GroupedProblemForm) - Method in class ec.coevolve.CompetitiveEvaluator
evalPopChunk(EvolutionState, int[], int[], int, SimpleProblemForm) - Method in class ec.multiobjective.spea2.SPEA2Evaluator: A private helper function for evaluatePopulation which evaluates a chunk of individuals in a subpopulation for a given thread.
EvalPrint - Interface in ec.app.ant.func
evalPrint(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem, int[][]) - Method in interface ec.app.ant.func.EvalPrint
evalPrint(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem, int[][]) - Method in class ec.app.ant.func.IfFoodAhead
evalPrint(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem, int[][]) - Method in class ec.app.ant.func.Left
evalPrint(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem, int[][]) - Method in class ec.app.ant.func.Move: Just like eval, but it retraces the map and prints out info
evalPrint(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem, int[][]) - Method in class ec.app.ant.func.Progn2
evalPrint(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem, int[][]) - Method in class ec.app.ant.func.Progn3
evalPrint(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem, int[][]) - Method in class ec.app.ant.func.Progn4
evalPrint(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem, int[][]) - Method in class ec.app.ant.func.Right
evalPseudoRoundRobin(EvolutionState, Individual[], GroupedProblemForm) - Method in class ec.coevolve.CompetitiveEvaluator
evalPseudoRoundRobinPopChunk(EvolutionState, int, int, int, Individual[], GroupedProblemForm) - Method in class ec.coevolve.CompetitiveEvaluator
evalRoundRobin(EvolutionState, int[], int[], Individual[], GroupedProblemForm) - Method in class ec.coevolve.CompetitiveEvaluator
evalRoundRobinPopChunk(EvolutionState, int, int, int, Individual[], GroupedProblemForm) - Method in class ec.coevolve.CompetitiveEvaluator: A private helper function for evalutatePopulation which evaluates a chunk of individuals in a subpopulation for a given thread.
evalSingleElimination(EvolutionState, Individual[], GroupedProblemForm) - Method in class ec.coevolve.CompetitiveEvaluator
evalthreads - Variable in class ec.EvolutionState: The requested number of threads to be used in evaluation, excepting perhaps a "parent" thread which gathers the other threads.
evaluate(EvolutionState, Individual, int, int) - Method in class ec.app.ant.Ant
evaluate(EvolutionState, Individual[], boolean[], boolean, int) - Method in class ec.app.coevolve1.CompetitiveMaxOne
evaluate(EvolutionState, Individual[], boolean[], boolean, int[], int) - Method in class ec.app.coevolve1.CompetitiveMaxOne
evaluate(EvolutionState, Individual[], boolean[], boolean, int) - Method in class ec.app.coevolve2.CoevolutionaryRosenbrock
evaluate(EvolutionState, Individual[], boolean[], boolean, int[], int) - Method in class ec.app.coevolve2.CoevolutionaryRosenbrock
evaluate(EvolutionState, Individual, int, int) - Method in class ec.app.ecsuite.ECSuite
evaluate(EvolutionState, Individual, int, int) - Method in class ec.app.edge.Edge
evaluate(EvolutionState, Individual, int, int) - Method in class ec.app.lawnmower.Lawnmower
evaluate(EvolutionState, Individual, int, int) - Method in class ec.app.multiplexer.Multiplexer
evaluate(EvolutionState, Individual, int, int) - Method in class ec.app.multiplexerslow.Multiplexer
evaluate(EvolutionState, Individual, int, int) - Method in class ec.app.parity.Parity
evaluate(EvolutionState, Individual, int, int) - Method in class ec.app.regression.Regression
evaluate(EvolutionState, Individual, int, int) - Method in class ec.app.sum.Sum
evaluate(EvolutionState, Individual, int, int) - Method in class ec.app.twobox.TwoBox
evaluate(EvolutionState, Individual[], boolean[], boolean, int[], int) - Method in interface ec.coevolve.GroupedProblemForm: Evaluates the individuals found in ind together.
evaluate(EvolutionState, Individual[], boolean[], boolean, int) - Method in interface ec.coevolve.GroupedProblemForm: Deprecated.
evaluate(EvolutionState, Individual, int, int) - Method in class ec.eval.MasterProblem
evaluate(EvolutionState, Individual[], boolean[], boolean, int) - Method in class ec.eval.MasterProblem
evaluate(EvolutionState, Individual[], boolean[], boolean, int[], int) - Method in class ec.eval.MasterProblem
evaluate(EvolutionState, int, GPData, ADFStack, GPIndividual, Problem, int) - Method in class ec.gp.ADFContext: Evaluates the argument number in the current context
evaluate(EvolutionState, Individual, int) - Method in class ec.Problem: Deprecated.
evaluate(EvolutionState, Individual, int, int) - Method in class ec.Problem
evaluate(EvolutionState, Individual, int, int) - Method in interface ec.simple.SimpleProblemForm: Evaluates the individual in ind, if necessary (perhaps not evaluating them if their evaluated flags are true), and sets their fitness appropriately.
evaluate(EvolutionState, Individual, int) - Method in interface ec.simple.SimpleProblemForm: Deprecated.
evaluated - Variable in class ec.Individual: Has the individual been evaluated and its fitness determined yet?
EVALUATED_PREAMBLE - Static variable in class ec.Individual: A string appropriate to put in front of whether or not the individual has been printed.
evaluatedIndividualAvailable() - Method in interface ec.eval.IMasterProblemServer
evaluatedIndividualAvailable() - Method in class ec.eval.MasterProblem: This will only return true if (1) the EvolutionState is a SteadyStateEvolutionState and (2) an individual has returned from the system.
evaluatedIndividualAvailable() - Method in class ec.eval.MasterProblemServer
evaluatedIndividualAvailable() - Method in class ec.eval.SlaveMonitor
evaluateGroupedProblemForm(EvolutionState, boolean, DataInputStream, DataOutputStream) - Static method in class ec.eval.Slave
evaluateIndividual(EvolutionState, Individual, int) - Method in class ec.steadystate.SteadyStateEvaluator: Submits an individual to be evaluated by the Problem, and adds it and its subpopulation to the queue.
evaluatePopulation(EvolutionState) - Method in class ec.coevolve.CompetitiveEvaluator: An evaluator that performs coevolutionary evaluation.
evaluatePopulation(EvolutionState) - Method in class ec.coevolve.MultiPopCoevolutionaryEvaluator
evaluatePopulation(EvolutionState) - Method in class ec.Evaluator: Evaluates the fitness of an entire population.
evaluatePopulation(EvolutionState) - Method in class ec.multiobjective.spea2.SPEA2Evaluator: A simple evaluator that doesn't do any coevolutionary evaluation.
evaluatePopulation(EvolutionState) - Method in class ec.simple.SimpleEvaluator: A simple evaluator that doesn't do any coevolutionary evaluation.
evaluatePopulation(EvolutionState) - Method in class ec.spatial.SpatialMultiPopCoevolutionaryEvaluator
evaluateSimpleProblemForm(EvolutionState, boolean, DataInputStream, DataOutputStream, String[]) - Static method in class ec.eval.Slave
evaluations - Variable in class ec.steadystate.SteadyStateEvolutionState: How many evaluations have we run so far?
Evaluator - Class in ec: An Evaluator is a singleton object which is responsible for the evaluation process during the course of an evolutionary run.
Evaluator() - Constructor for class ec.Evaluator
evaluator - Variable in class ec.EvolutionState: The population evaluator, a singleton object.
EvolutionState - Class in ec: An EvolutionState object is a singleton object which holds the entire state of an evolutionary run.
EvolutionState() - Constructor for class ec.EvolutionState: This will be called to create your evolution state; immediately after the constructor is called, the parameters, random, and output fields will be set for you.
Evolve - Class in com.parabon.ec: ORIGIN evolution main program.
Evolve() - Constructor for class com.parabon.ec.Evolve: Constructs evolver.
evolve() - Method in class com.parabon.ec.Evolve: Initializes, executes, and finishes an evolutionary run.
evolve() - Method in class com.parabon.ec.steadystate.SteadyStateEvolutionState: Sends individuals to be evaluated and collects evaluation results.
evolve() - Method in class ec.EvolutionState
Evolve - Class in ec: Evolve is the main entry class for an evolutionary computation run.
Evolve() - Constructor for class ec.Evolve
evolve() - Method in class ec.exchange.IslandExchange
evolve() - Method in class ec.simple.SimpleEvolutionState
evolve() - Method in class ec.steadystate.SteadyStateEvolutionState
exchanger - Variable in class ec.EvolutionState: The population exchanger, a singleton object.
Exchanger - Class in ec: The Exchanger is a singleton object whose job is to (optionally) perform individual exchanges between subpopulations in the run, or exchange individuals with other concurrent evolutionary run processes, using sockets or whatever.
Exchanger() - Constructor for class ec.Exchanger
exists(Parameter) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Returns true if parameter exist in the database
exists(Parameter, Parameter) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Returns true if either parameter or defaultParameter exists in the database
exists(Parameter) - Method in interface ec.util.IParameterDatabase: Returns true if parameter exist in the database
exists(Parameter, Parameter) - Method in interface ec.util.IParameterDatabase: Returns true if either parameter or defaultParameter exists in the database
exists(Parameter) - Method in class ec.util.ParameterDatabase: Returns true if parameter exist in the database
exists(Parameter, Parameter) - Method in class ec.util.ParameterDatabase: Returns true if either parameter or defaultParameter exists in the database
exitIfErrors() - Method in class com.parabon.ec.logging.LoggerOutput: Throws a runtime exception if a fatal error has been logged.
exitIfErrors() - Method in interface ec.util.IOutput: Exits with a fatal error if the error flag has been raised.
exitIfErrors() - Method in class ec.util.Output
Exp - Class in ec.app.regression.func
Exp() - Constructor for class ec.app.regression.func.Exp
expectedSize - Variable in class ec.gp.build.PTC1: The default expected tree size for PTC1

F

F - Variable in class ec.de.Rand1EitherOrDEBreeder
F - Variable in class ec.de.Rand1ExpDEBreeder
f_prototype - Variable in class ec.Species: The prototypical fitness for individuals of this species.
Fast - Class in ec.app.multiplexer: Fast contains lots of magic numbers for speeding up Multiplexer, basically arrays of bitfields representing the various on/off bit values for all of the scoreboard permutations of 3, 6, and 11-multiplexer.
Fast() - Constructor for class ec.app.multiplexer.Fast
fatal(String) - Method in class com.parabon.ec.logging.LoggerOutput
fatal(String, Parameter) - Method in class com.parabon.ec.logging.LoggerOutput
fatal(String, Parameter, Parameter) - Method in class com.parabon.ec.logging.LoggerOutput: Logs a fatal error.
fatal(String) - Method in interface ec.util.IOutput: Posts a fatal error.
fatal(String, Parameter) - Method in interface ec.util.IOutput: Posts a fatal error.
fatal(String, Parameter, Parameter) - Method in interface ec.util.IOutput: Posts a fatal error.
fatal(String) - Method in class ec.util.Output
fatal(String, Parameter) - Method in class ec.util.Output
fatal(String, Parameter, Parameter) - Method in class ec.util.Output
fileFor(Parameter) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Searches down through databases to find the parameter file which holds a given parameter.
fileFor(Parameter) - Method in interface ec.util.IParameterDatabase: Searches down through databases to find the parameter file which holds a given parameter.
fileFor(Parameter) - Method in class ec.util.ParameterDatabase: Searches down through databases to find the parameter file which holds a given parameter.
filename - Variable in class ec.util.Log: A filename, if the writer writes to a file
fill(int, char) - Static method in class ec.app.edge.Edge
finalize() - Method in class ec.util.Log
finalize() - Method in class ec.util.Output
finalStatistics(EvolutionState, int) - Method in class com.parabon.ec.DummyStatistics
FinalStatistics - Class in com.parabon.ec.simple: Like SimpleStatistics, but also prints out all individuals in the population.
FinalStatistics() - Constructor for class com.parabon.ec.simple.FinalStatistics
finalStatistics(EvolutionState, int) - Method in class com.parabon.ec.simple.FinalStatistics: Prints the usual final statistics and then prints all individuals and their fitness scores.
finalStatistics(EvolutionState, int) - Method in class ec.app.ant.AntStatistics
finalStatistics(EvolutionState, int) - Method in class ec.app.edge.EdgeStatistics
finalStatistics(EvolutionState, int) - Method in class ec.app.lawnmower.LawnmowerStatistics
finalStatistics(EvolutionState, int) - Method in class ec.gp.koza.KozaStatistics: Logs the best individual of the run.
finalStatistics(EvolutionState, int) - Method in class ec.simple.SimpleStatistics: Logs the best individual of the run.
finalStatistics(EvolutionState, int) - Method in class ec.Statistics: Called immediately after the run has completed.
finalStatistics(EvolutionState, int) - Method in interface ec.steadystate.SteadyStateStatisticsForm: Called immediately after the run has completed.
finish(int) - Method in class com.parabon.ec.steadystate.SteadyStateEvolutionState
finish(int) - Method in class ec.EvolutionState
finish(int) - Method in class ec.exchange.IslandExchange
finish(int) - Method in class ec.simple.SimpleEvolutionState
finish(int) - Method in class ec.steadystate.SteadyStateEvolutionState
finisher - Variable in class ec.EvolutionState: The population finisher, a singleton object.
Finisher - Class in ec: Finisher is a singleton object which is responsible for cleaning up a population after a run has completed.
Finisher() - Constructor for class ec.Finisher
finishEvaluating(EvolutionState, int) - Method in class ec.eval.MasterProblem
finishEvaluating(EvolutionState, int) - Method in class ec.Problem: Will be called by the Evaluator after prepareToEvaluate(...) is called and then a series of individuals are evaluated.
finishJob(PrintWriter) - Method in class com.parabon.ec.Evolve: Prints parameter statistics and cleans up evolution state at end of job.
finishJob() - Method in class com.parabon.ec.Evolve: Cleans up at the end of a job.
finishPipelines(EvolutionState) - Method in class ec.steadystate.SteadyStateBreeder
finishPopulation(EvolutionState, int) - Method in class ec.Finisher: Cleans up the population after the run has completed.
finishPopulation(EvolutionState, int) - Method in class ec.simple.SimpleFinisher: Doesn't do anything.
finishProducing(EvolutionState, int, int) - Method in class ec.BreedingPipeline
finishProducing(EvolutionState, int, int) - Method in class ec.BreedingSource: Called after produce(...), usually once a generation, or maybe only once if you're doing steady-state evolution (at the end of the run).
finishProducing(EvolutionState, int, int) - Method in class ec.select.BestSelection
finishProducing(EvolutionState, int, int) - Method in class ec.select.FitProportionateSelection
finishProducing(EvolutionState, int, int) - Method in class ec.select.GreedyOverselection
finishProducing(EvolutionState, int, int) - Method in class ec.SelectionMethod: A default version of finishProducing, which does nothing.
fireParameterAccessed(Parameter, String) - Method in class ec.util.ParameterDatabase: Fires a parameter accessed event.
fireParameterSet(Parameter, String) - Method in class ec.util.ParameterDatabase: Fires a parameter set event.
fireUpServer(EvolutionState, Parameter) - Method in class ec.exchange.IslandExchange: Fires up the server.
FirstSelection - Class in ec.select: Always picks the first individual in the subpopulation.
FirstSelection() - Constructor for class ec.select.FirstSelection
firstTime - Variable in class ec.steadystate.SteadyStateEvolutionState: First time calling evolve
Fitness - Class in ec: Fitness is a prototype which describes the fitness of an individual.
Fitness() - Constructor for class ec.Fitness
fitness() - Method in class ec.Fitness: Should return an absolute fitness value ranging from negative infinity to infinity, NOT inclusive (thus infinity, negative infinity, and NaN are NOT valid fitness values).
fitness - Variable in class ec.gp.koza.KozaFitness: This ranges from 0 (best) to infinity (worst).
fitness() - Method in class ec.gp.koza.KozaFitness: Returns the adjusted fitness metric, which recasts the fitness to the half-open interval (0,1], where 1 is ideal and 0 is worst.
fitness - Variable in class ec.Individual: The fitness of the Individual.
fitness() - Method in class ec.multiobjective.MultiObjectiveFitness: Returns the Max() of multifitnesses, which adheres to Fitness.java's protocol for this method.
fitness - Variable in class ec.simple.SimpleFitness
fitness() - Method in class ec.simple.SimpleFitness
FITNESS_POSTAMBLE - Static variable in class ec.multiobjective.MultiObjectiveFitness
FITNESS_PREAMBLE - Static variable in class ec.Fitness: Basic preamble for printing Fitness values out
fitnessPressureProb - Variable in class ec.parsimony.ProportionalTournamentSelection: The probability of having the tournament based on fitness
fitnessToString() - Method in class ec.Fitness: Print to a string the fitness in a fashion intended to be parsed in again via readFitness(...).
fitnessToString() - Method in class ec.gp.koza.KozaFitness
fitnessToString() - Method in class ec.multiobjective.MultiObjectiveFitness
fitnessToString() - Method in class ec.multiobjective.spea2.SPEA2MultiObjectiveFitness
fitnessToString() - Method in class ec.simple.SimpleFitness
fitnessToStringForHumans() - Method in class ec.Fitness: Print to a string the fitness in a fashion readable by humans, and not intended to be parsed in again.
fitnessToStringForHumans() - Method in class ec.gp.koza.KozaFitness
fitnessToStringForHumans() - Method in class ec.multiobjective.MultiObjectiveFitness
fitnessToStringForHumans() - Method in class ec.multiobjective.spea2.SPEA2MultiObjectiveFitness
fitnessToStringForHumans() - Method in class ec.simple.SimpleFitness
FitProportionateSelection - Class in ec.select: Picks individuals in a population in direct proportion to their fitnesses as returned by their fitness() methods.
FitProportionateSelection() - Constructor for class ec.select.FitProportionateSelection
FloatVectorIndividual - Class in ec.vector: FloatVectorIndividual is a VectorIndividual whose genome is an array of floats.
FloatVectorIndividual() - Constructor for class ec.vector.FloatVectorIndividual
FloatVectorSpecies - Class in ec.vector: FloatVectorSpecies is a subclass of VectorSpecies with special constraints for floating-point vectors, namely FloatVectorIndividual and DoubleVectorIndividual.
FloatVectorSpecies() - Constructor for class ec.vector.FloatVectorSpecies
flush() - Method in class com.parabon.ec.logging.LoggerOutput
flush(EvolutionState, int) - Method in class ec.eval.MasterProblem
flush() - Method in class ec.util.CompressingOutputStream: Insure all remaining data will be output.
flush() - Method in interface ec.util.IOutput: Flushes the logs
flush() - Method in class ec.util.Output
flushAtMax_ - Variable in class com.parabon.ec.steadystate.SteadyStateEvolutionState: Flush whenever the max number of individuals evaluating is reached.
FOOD - Static variable in class ec.app.ant.Ant
food - Variable in class ec.app.ant.Ant
foodx - Variable in class ec.app.ant.Ant
foody - Variable in class ec.app.ant.Ant
ForceBreedingPipeline - Class in ec.breed: ForceBreedingPipeline has one source.
ForceBreedingPipeline() - Constructor for class ec.breed.ForceBreedingPipeline
format(LoggingEvent) - Method in class com.parabon.ec.logging.DirectLayout
formatMessage(String, Parameter, Parameter) - Method in class com.parabon.ec.logging.LoggerOutput: Formats a log message.
FOUND - Static variable in class ec.exchange.IslandExchange: Found signal
FOUND - Static variable in class ec.exchange.IslandExchangeServer: The found message
FOUND_TIMEOUT - Static variable in class ec.exchange.IslandExchange: How long we sleep between checking for FOUND messages
FOUND_TIMEOUT - Static variable in class ec.exchange.IslandExchangeServer: How much to wait for the found message (on a non-blocking socket)
Frog - Class in ec.app.lawnmower.func
Frog() - Constructor for class ec.app.lawnmower.func.Frog
from - Variable in class ec.app.edge.Edge
from - Variable in class ec.simple.SimpleEvaluator.SimpleEvaluatorThread
FullBuilder - Class in ec.gp.koza: FullBuilder is a GPNodeBuilder which implements the FULL tree building method described in Koza I/II.
FullBuilder() - Constructor for class ec.gp.koza.FullBuilder
fullNode(EvolutionState, int, int, GPType, int, GPNodeParent, int, GPFunctionSet) - Method in class ec.gp.koza.KozaBuilder: A private recursive method which builds a FULL-style tree for newRootedTree(...)
fullTest(EvolutionState, Individual, int, boolean[][], boolean[][]) - Method in class ec.app.edge.Edge: Tests an individual, returning its successful positives in totpos and its successful negatives in totneg.
func(double) - Method in class ec.app.regression.Quintic
func(double) - Method in class ec.app.regression.Regression
func(double) - Method in class ec.app.regression.Sextic
func(double, double, double, double, double, double) - Method in class ec.app.twobox.TwoBox
funcnodes - Variable in class ec.gp.build.Uniform
functionName - Variable in class ec.gp.ADF: The "function name" of the ADF, to distinguish it from other ADF functions you might provide.
functionset - Variable in class ec.gp.GPTreeConstraints: The function set for nodes in the tree
functionSetFor(String, EvolutionState) - Static method in class ec.gp.GPFunctionSet: Returns the function set for a given name.
functionSetRepository - Variable in class ec.gp.GPInitializer
functionsets - Variable in class ec.gp.build.Uniform

G

gatherer - Variable in class ec.gp.koza.KozaNodeSelector: Used internally to look for a node.
gaussMutationStdev - Variable in class ec.vector.FloatVectorSpecies
gaussMutationStdev(int) - Method in class ec.vector.FloatVectorSpecies
gaussMutationStdevs - Variable in class ec.vector.FloatVectorSpecies: Set to null if not specified If individualGeneMinMaxUsed, that this is used too.
genePrototype - Variable in class ec.vector.GeneVectorSpecies
generalize - Variable in class ec.app.edge.Edge
generateMax - Variable in class ec.breed.GenerationSwitchPipeline
generateMax - Variable in class ec.breed.MultiBreedingPipeline
generation - Variable in class ec.EvolutionState: The current generation of the population in the run.
generationBoundary - Variable in class ec.steadystate.SteadyStateEvolutionState: Did we just start a new generation?
generationBoundaryStatistics(EvolutionState) - Method in class com.parabon.ec.DummyStatistics
generationBoundaryStatistics(EvolutionState) - Method in class ec.simple.SimpleStatistics: Steady-state only: computes statistics at each generation count
generationBoundaryStatistics(EvolutionState) - Method in class ec.Statistics: STEADY-STATE: called each time the generation count increments
generationBoundaryStatistics(EvolutionState) - Method in interface ec.steadystate.SteadyStateStatisticsForm: Called when the generation count increments
generationSize - Variable in class ec.steadystate.SteadyStateEvolutionState: how big is a generation? Set to the size of subpopulation 0 of the initial population.
generationSwitch - Variable in class ec.breed.GenerationSwitchPipeline
GenerationSwitchPipeline - Class in ec.breed: GenerationSwitchPipeline is a simple BreedingPipeline which switches its source depending on the generation.
GenerationSwitchPipeline() - Constructor for class ec.breed.GenerationSwitchPipeline
GeneVectorIndividual - Class in ec.vector: GeneVectorIndividual is a VectorIndividual whose genome is an array of VectorGenes.
GeneVectorIndividual() - Constructor for class ec.vector.GeneVectorIndividual
GeneVectorSpecies - Class in ec.vector: GeneVectorSpecies is a subclass of VectorSpecies with special constraints for GeneVectorIndividuals.
GeneVectorSpecies() - Constructor for class ec.vector.GeneVectorSpecies
genome - Variable in class ec.vector.BitVectorIndividual
genome - Variable in class ec.vector.ByteVectorIndividual
genome - Variable in class ec.vector.DoubleVectorIndividual
genome - Variable in class ec.vector.FloatVectorIndividual
genome - Variable in class ec.vector.GeneVectorIndividual
genome - Variable in class ec.vector.IntegerVectorIndividual
genome - Variable in class ec.vector.LongVectorIndividual
genome - Variable in class ec.vector.ShortVectorIndividual
genomeLength() - Method in class ec.vector.BitVectorIndividual
genomeLength() - Method in class ec.vector.ByteVectorIndividual
genomeLength() - Method in class ec.vector.DoubleVectorIndividual
genomeLength() - Method in class ec.vector.FloatVectorIndividual
genomeLength() - Method in class ec.vector.GeneVectorIndividual
genomeLength() - Method in class ec.vector.IntegerVectorIndividual
genomeLength() - Method in class ec.vector.LongVectorIndividual
genomeLength() - Method in class ec.vector.ShortVectorIndividual
genomeLength() - Method in class ec.vector.VectorIndividual: Returns the length of the gene array.
genomeSize - Variable in class ec.vector.VectorSpecies: How big of a genome should we create on initialization?
genotypeToString() - Method in class ec.Individual: Print to a string the genotype of the Individual in a fashion intended to be parsed in again via parseGenotype(...).
genotypeToString() - Method in class ec.vector.BitVectorIndividual
genotypeToString() - Method in class ec.vector.ByteVectorIndividual
genotypeToString() - Method in class ec.vector.DoubleVectorIndividual
genotypeToString() - Method in class ec.vector.FloatVectorIndividual
genotypeToString() - Method in class ec.vector.GeneVectorIndividual
genotypeToString() - Method in class ec.vector.IntegerVectorIndividual
genotypeToString() - Method in class ec.vector.LongVectorIndividual
genotypeToString() - Method in class ec.vector.ShortVectorIndividual
genotypeToStringForHumans() - Method in class ec.Individual: Print to a string the genotype of the Individual in a fashion readable by humans, and not intended to be parsed in again.
genotypeToStringForHumans() - Method in class ec.vector.BitVectorIndividual
genotypeToStringForHumans() - Method in class ec.vector.ByteVectorIndividual
genotypeToStringForHumans() - Method in class ec.vector.DoubleVectorIndividual
genotypeToStringForHumans() - Method in class ec.vector.FloatVectorIndividual
genotypeToStringForHumans() - Method in class ec.vector.GeneVectorIndividual
genotypeToStringForHumans() - Method in class ec.vector.IntegerVectorIndividual
genotypeToStringForHumans() - Method in class ec.vector.LongVectorIndividual
genotypeToStringForHumans() - Method in class ec.vector.ShortVectorIndividual
get() - Method in class ec.gp.ADFStack: Returns an ADFContext from the stack's reserve, or creates one fresh if there are none in reserve.
getBase() - Method in class ec.Problem
getBasePath() - Method in class com.parabon.ec.util.ParameterConfiguration: Gets the base path used to resolve relative pathnames.
getBoolean(Parameter, Parameter, boolean) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Searches for a given parameter; if the parameter does not exist, the value of defaultParameter is returned if it exists.
getBoolean(Parameter, boolean) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Searches down through databases to find a given parameter; If the parameter does not exist, defaultValue is returned.
getBoolean(Parameter, Parameter, boolean) - Method in interface ec.util.IParameterDatabase: Searches down through databases to find a given parameter; If the parameter does not exist, defaultValue is returned.
getBoolean(Parameter, Parameter, boolean) - Method in class ec.util.ParameterDatabase: Searches down through databases to find a given parameter; If the parameter does not exist, defaultValue is returned.
getChild(Object, int) - Method in class ec.util.ParameterDatabaseTreeModel
getChild(int) - Method in class ec.util.ReflectedObject
getChild(Object, int) - Method in class ec.util.ReflectedObject
getChildCount(Object) - Method in class ec.util.ParameterDatabaseTreeModel
getChildCount(Object) - Method in class ec.util.ReflectedObject
getChildren() - Method in class ec.util.ReflectedObject
getClassForParameter(Parameter, Parameter, Class) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Gets a class parameter value.
getClassForParameter(Parameter, Parameter, Class) - Method in interface ec.util.IParameterDatabase: Searches down through databases to find a given parameter.
getClassForParameter(Parameter, Parameter, Class) - Method in class ec.util.ParameterDatabase: Searches down through databases to find a given parameter.
getCurrentJob() - Method in class com.parabon.ec.Evolve: Gets the evolutionary run job number.
getDouble(Parameter, Parameter, double) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Searches down through databases to find a given parameter, whose value must be a double >= minValue.
getDouble(Parameter, Parameter, double, double) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Searches down through databases to find a given parameter, whose value must be a double >= minValue and <= maxValue.
getDouble(Parameter, Parameter, double) - Method in interface ec.util.IParameterDatabase: Searches down through databases to find a given parameter, whose value must be a double >= minValue.
getDouble(Parameter, Parameter, double, double) - Method in interface ec.util.IParameterDatabase: Searches down through databases to find a given parameter, whose value must be a double >= minValue and <= maxValue.
getDouble(Parameter, Parameter, double) - Method in class ec.util.ParameterDatabase: Searches down through databases to find a given parameter, whose value must be a double >= minValue.
getDouble(Parameter, Parameter, double, double) - Method in class ec.util.ParameterDatabase: Searches down through databases to find a given parameter, whose value must be a double >= minValue and <= maxValue.
getDoubleWithDefault(Parameter, Parameter, double) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Searches down through databases to find a given parameter, which must be a float.
getDoubleWithDefault(Parameter, Parameter, double) - Method in interface ec.util.IParameterDatabase: Searches down through databases to find a given parameter, which must be a float.
getDoubleWithDefault(Parameter, Parameter, double) - Method in class ec.util.ParameterDatabase: Searches down through databases to find a given parameter, which must be a float.
getEncoding() - Method in class com.parabon.ec.util.ParameterConfiguration: Gets the character set encoding for parameter files.
getEvaluatedIndividual(EvolutionState) - Method in interface ec.eval.IMasterProblemServer
getEvaluatedIndividual(EvolutionState) - Method in class ec.eval.MasterProblemServer
getEvaluatedIndividual() - Method in class ec.eval.SlaveMonitor: Blocks until an individual comes available
getField(int) - Method in class ec.util.ReflectedObject
getFields() - Method in class ec.util.ReflectedObject
getFile(Parameter, Parameter) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Constructs a File from the pathname value of a parameter.
getFile(Parameter, Parameter) - Method in interface ec.util.IParameterDatabase: Searches down through the databases to find a given parameter, whose value must be an absolute or relative path name.
getFile(Parameter, Parameter) - Method in class ec.util.ParameterDatabase: Searches down through the databases to find a given parameter, whose value must be an absolute or relative path name.
getFloat(Parameter, Parameter, double) - Method in class com.parabon.ec.util.CollectionsParameterDatabase
getFloat(Parameter, Parameter, double, double) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Searches down through databases to find a given parameter, whose value must be a float >= minValue and <= maxValue.
getFloat(Parameter, Parameter, double) - Method in interface ec.util.IParameterDatabase: Gets a parameter whose value must be a float >= minValue.
getFloat(Parameter, Parameter, double, double) - Method in interface ec.util.IParameterDatabase: Searches down through databases to find a given parameter, whose value must be a float >= minValue and <= maxValue.
getFloat(Parameter, Parameter, double) - Method in class ec.util.ParameterDatabase: Searches down through databases to find a given parameter, whose value must be a float >= minValue.
getFloat(Parameter, Parameter, double, double) - Method in class ec.util.ParameterDatabase: Searches down through databases to find a given parameter, whose value must be a float >= minValue and <= maxValue.
getFloatWithDefault(Parameter, Parameter, double) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Searches down through databases to find a given parameter, which must be a float.
getFloatWithDefault(Parameter, Parameter, double) - Method in interface ec.util.IParameterDatabase: Searches down through databases to find a given parameter, which must be a float.
getFloatWithDefault(Parameter, Parameter, double) - Method in class ec.util.ParameterDatabase: Searches down through databases to find a given parameter, which must be a float.
getGenome() - Method in class ec.vector.BitVectorIndividual
getGenome() - Method in class ec.vector.ByteVectorIndividual
getGenome() - Method in class ec.vector.DoubleVectorIndividual
getGenome() - Method in class ec.vector.FloatVectorIndividual
getGenome() - Method in class ec.vector.GeneVectorIndividual
getGenome() - Method in class ec.vector.IntegerVectorIndividual
getGenome() - Method in class ec.vector.LongVectorIndividual
getGenome() - Method in class ec.vector.ShortVectorIndividual
getGenome() - Method in class ec.vector.VectorIndividual: Returns the gene array.
getIndex(int) - Method in interface ec.spatial.Space: Functionality: retrieve the index for a specific threanum.
getIndex(int) - Method in class ec.spatial.Spatial1DSubpopulation
getIndexOfChild(Object, Object) - Method in class ec.util.ReflectedObject
getIndexRandomNeighbor(EvolutionState, int, int) - Method in interface ec.spatial.Space: Input: the maximum distance for neighbors.
getIndexRandomNeighbor(EvolutionState, int, int) - Method in class ec.spatial.Spatial1DSubpopulation: Returns a the index of a random neighbor.
getInputStream(Parameter, Parameter) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Returns an open input stream for the file specified by the parameter.
getInputStream(Parameter, Parameter) - Method in interface ec.util.IParameterDatabase
getInputStream(Parameter, Parameter) - Method in class ec.util.ParameterDatabase
getInstanceForParameter(Parameter, Parameter, Class) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Searches down through databases to find a given parameter, whose value must be a full Class name, and the class must be a descendent of but not equal to mustCastTosuperclass .
getInstanceForParameter(Parameter, Parameter, Class) - Method in interface ec.util.IParameterDatabase: Searches down through databases to find a given parameter, whose value must be a full Class name, and the class must be a descendent of but not equal to mustCastTosuperclass .
getInstanceForParameter(Parameter, Parameter, Class) - Method in class ec.util.ParameterDatabase: Searches down through databases to find a given parameter, whose value must be a full Class name, and the class must be a descendent of but not equal to mustCastTosuperclass .
getInstanceForParameterEq(Parameter, Parameter, Class) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Searches down through databases to find a given parameter, whose value must be a full Class name, and the class must be a descendent, or equal to, mustCastTosuperclass .
getInstanceForParameterEq(Parameter, Parameter, Class) - Method in interface ec.util.IParameterDatabase: Searches down through databases to find a given parameter, whose value must be a full Class name, and the class must be a descendent, or equal to, mustCastTosuperclass .
getInstanceForParameterEq(Parameter, Parameter, Class) - Method in class ec.util.ParameterDatabase: Searches down through databases to find a given parameter, whose value must be a full Class name, and the class must be a descendent, or equal to, mustCastTosuperclass .
getInt(Parameter, Parameter) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Searches down through databases to find a given parameter, whose value must be an integer.
getInt(Parameter, Parameter, int) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Searches down through databases to find a given parameter, whose value must be an integer >= minValue.
getInt(Parameter, Parameter) - Method in interface ec.util.IParameterDatabase: Searches down through databases to find a given parameter, whose value must be an integer.
getInt(Parameter, Parameter, int) - Method in interface ec.util.IParameterDatabase: Searches down through databases to find a given parameter, whose value must be an integer >= minValue.
getInt(Parameter, Parameter) - Method in class ec.util.ParameterDatabase: Searches down through databases to find a given parameter, whose value must be an integer.
getInt(Parameter, Parameter, int) - Method in class ec.util.ParameterDatabase: Searches down through databases to find a given parameter, whose value must be an integer >= minValue.
getIntWithDefault(Parameter, Parameter, int) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Searches down through databases to find a given parameter, which must be an integer.
getIntWithDefault(Parameter, Parameter, int) - Method in interface ec.util.IParameterDatabase: Searches down through databases to find a given parameter, which must be an integer.
getIntWithDefault(Parameter, Parameter, int) - Method in class ec.util.ParameterDatabase: Searches down through databases to find a given parameter, which must be an integer.
getIntWithMax(Parameter, Parameter, int, int) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Searches down through databases to find a given parameter, whose value must be an integer >= minValue and <= maxValue.
getIntWithMax(Parameter, Parameter, int, int) - Method in interface ec.util.IParameterDatabase: Searches down through databases to find a given parameter, whose value must be an integer >= minValue and <= maxValue.
getIntWithMax(Parameter, Parameter, int, int) - Method in class ec.util.ParameterDatabase: Searches down through databases to find a given parameter, whose value must be an integer >= minValue and <= maxValue.
getIsland(String) - Method in class ec.exchange.AbstractIslandExchangeServer: Gets island info
getJobSize() - Method in class ec.eval.MasterProblem
getLong(Parameter, Parameter) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Searches down through databases to find a given parameter, whose value must be a long.
getLong(Parameter, Parameter, long) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Searches down through databases to find a given parameter, whose value must be a long >= minValue.
getLong(Parameter, Parameter, long, long) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Deprecated.
getLong(Parameter, Parameter) - Method in interface ec.util.IParameterDatabase: Searches down through databases to find a given parameter, whose value must be a long.
getLong(Parameter, Parameter, long) - Method in interface ec.util.IParameterDatabase: Searches down through databases to find a given parameter, whose value must be a long >= minValue.
getLong(Parameter, Parameter, long, long) - Method in interface ec.util.IParameterDatabase: Deprecated.
getLong(Parameter, Parameter) - Method in class ec.util.ParameterDatabase: Searches down through databases to find a given parameter, whose value must be a long.
getLong(Parameter, Parameter, long) - Method in class ec.util.ParameterDatabase: Searches down through databases to find a given parameter, whose value must be a long >= minValue.
getLong(Parameter, Parameter, long, long) - Method in class ec.util.ParameterDatabase: Deprecated.
getLongWithDefault(Parameter, Parameter, long) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Searches down through databases to find a given parameter, which must be a long.
getLongWithDefault(Parameter, Parameter, long) - Method in interface ec.util.IParameterDatabase: Searches down through databases to find a given parameter, which must be a long.
getLongWithDefault(Parameter, Parameter, long) - Method in class ec.util.ParameterDatabase: Searches down through databases to find a given parameter, which must be a long.
getLongWithMax(Parameter, Parameter, long, long) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Searches down through databases to find a given parameter, whose value must be a long >= minValue and = < maxValue.
getLongWithMax(Parameter, Parameter, long, long) - Method in interface ec.util.IParameterDatabase: Searches down through databases to find a given parameter, whose value must be a long >= minValue and = < maxValue.
getLongWithMax(Parameter, Parameter, long, long) - Method in class ec.util.ParameterDatabase: Searches down through databases to find a given parameter, whose value must be a long >= minValue and = < maxValue.
getNextAvailableIndividual() - Method in class ec.eval.SlaveMonitor: Returns null if there is no such individual, else returns the next individual.
getNextEvaluatedIndividual(EvolutionState) - Method in class ec.eval.MasterProblem: This method blocks until an individual is available from the slaves (which will cause evaluatedIndividualAvailable() to return true), at which time it returns the individual.
getNextEvaluatedIndividual(EvolutionState) - Method in class ec.steadystate.SteadyStateEvaluator: Returns the QueueIndividual from the front of the queue.
getNumberOfJobs() - Method in class com.parabon.ec.Evolve
getNumChildren() - Method in class ec.util.ReflectedObject
getNumEliteIndividuals(int) - Method in class ec.coevolve.MultiPopCoevolutionaryEvaluator
getNumFields() - Method in class ec.util.ReflectedObject
getNumPartners(int) - Method in class ec.coevolve.MultiPopCoevolutionaryEvaluator
getNumPreviousGenerationPartners(int) - Method in class ec.coevolve.MultiPopCoevolutionaryEvaluator
getNumRandomPartners(int) - Method in class ec.coevolve.MultiPopCoevolutionaryEvaluator
getOrigin() - Method in class com.parabon.ec.util.LocatedPropertiesConfiguration: Gets the origin of parameters in this database.
getOrigin() - Method in class com.parabon.ec.util.ParameterLocator
getParameter() - Method in class ec.util.ParameterDatabaseEvent
getParameterDatabase() - Method in class com.parabon.ec.Evolve: Gets the current parameter database.
getPrefix() - Method in class com.parabon.ec.util.CollectionsParameterDatabase
getProbability(Object) - Method in class ec.BreedingSource
getProbability(Object) - Method in interface ec.util.RandomChoiceChooser: Returns obj's probability
getProbability(Object) - Method in interface ec.util.RandomChoiceChooserD: Returns obj's probability
getProperty(String) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Gets a parameter value.
getProperty(String) - Method in class com.parabon.ec.util.LocatedSystemConfiguration
getRoot() - Method in class ec.util.ReflectedObject
gets_n_percent - Variable in class ec.select.GreedyOverselection
getShadowedValues(Parameter) - Method in class ec.util.ParameterDatabase
getState() - Method in class com.parabon.ec.Evolve: Gets the evolution state
getString(Parameter, Parameter) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Searches down through databases to find a given parameter.
getString(String, String) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Overloads the standard getString method to unwrap values that have a location, and to automatically convert non-string values to strings.
getString(Parameter, Parameter) - Method in interface ec.util.IParameterDatabase: Searches down through databases to find a given parameter.
getString(Parameter, Parameter) - Method in class ec.util.ParameterDatabase: Searches down through databases to find a given parameter.
getStringWithDefault(Parameter, Parameter, String) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Searches down through databases to find a given parameter.
getStringWithDefault(Parameter, Parameter, String) - Method in interface ec.util.IParameterDatabase: Searches down through databases to find a given parameter.
getStringWithDefault(Parameter, Parameter, String) - Method in class ec.util.ParameterDatabase: Searches down through databases to find a given parameter.
getType() - Method in class ec.util.ParameterDatabaseEvent
getValue() - Method in class com.parabon.ec.util.ParameterLocator: Gets parameter value.
getValue() - Method in class ec.util.ParameterDatabaseEvent
getVerbosity() - Method in class com.parabon.ec.logging.LoggerOutput: Gets global verbosity level.
getVerbosity() - Method in interface ec.util.IOutput: Returns the Output object's general verbosity
getVerbosity() - Method in class ec.util.Output
getVisibleLeaves() - Method in class ec.util.ParameterDatabaseTreeModel
GLOBAL_BEST_PREAMBLE - Static variable in class ec.pso.PSOSubpopulation
global_modulo - Variable in class ec.exchange.AbstractIslandExchangeServer: If synchronous this generation modulo is used for all islands
global_offset - Variable in class ec.exchange.AbstractIslandExchangeServer: If synchronous this generation offset is used for all islands
globalBest - Variable in class ec.pso.PSOSubpopulation
GOODBYE - Static variable in class ec.exchange.IslandExchangeServer: The final message to be sent to all islands when an individual has been found
GPAtomicType - Class in ec.gp: A GPAtomicType is a simple, atomic GPType.
GPAtomicType(String) - Constructor for class ec.gp.GPAtomicType: Use this constructor for GPAtomic Type unless you know what you're doing
GPAtomicType() - Constructor for class ec.gp.GPAtomicType: Don't use this constructor unless you call setup(...) immediately after it.
GPBreedDefaults - Class in ec.gp.breed: A static class that returns the base for "default values" which various GP breeding operators use, rather than making the user specify them all on a per- species basis.
GPBreedDefaults() - Constructor for class ec.gp.breed.GPBreedDefaults
GPBreedingPipeline - Class in ec.gp: A GPBreedingPipeline is a BreedingPipeline which produces only members of some subclass of GPSpecies.
GPBreedingPipeline() - Constructor for class ec.gp.GPBreedingPipeline
GPBuildDefaults - Class in ec.gp.build
GPBuildDefaults() - Constructor for class ec.gp.build.GPBuildDefaults
GPData - Class in ec.gp: GPData is the parent class of data transferred between GPNodes.
GPData() - Constructor for class ec.gp.GPData
GPDefaults - Class in ec.gp: A static class that returns the base for "default values" which GP-style operators use, rather than making the user specify them all on a per- species basis.
GPDefaults() - Constructor for class ec.gp.GPDefaults
GPFunctionSet - Class in ec.gp: GPFunctionSet is a Clique which represents a set of GPNode prototypes forming a standard function set for forming certain trees in individuals.
GPFunctionSet() - Constructor for class ec.gp.GPFunctionSet
GPIndividual - Class in ec.gp: GPIndividual is an Individual used for GP evolution runs.
GPIndividual() - Constructor for class ec.gp.GPIndividual
GPInitializer - Class in ec.gp: GPInitializer is a SimpleInitializer which sets up all the Cliques, ( the initial [tree/node]constraints, types, and function sets) for the GP system.
GPInitializer() - Constructor for class ec.gp.GPInitializer
GPKozaDefaults - Class in ec.gp.koza: A static class that returns the base for "default values" which Koza-style operators use, rather than making the user specify them all on a per- species basis.
GPKozaDefaults() - Constructor for class ec.gp.koza.GPKozaDefaults
GPNode - Class in ec.gp: GPNode is a GPNodeParent which is the abstract superclass of all GP function nodes in trees.
GPNode() - Constructor for class ec.gp.GPNode
GPNodeBuilder - Class in ec.gp: GPNodeBuilder is a Prototype which defines the superclass for objects which create ("grow") GP trees, whether for population initialization, subtree mutation, or whatnot.
GPNodeBuilder() - Constructor for class ec.gp.GPNodeBuilder
GPNodeConstraints - Class in ec.gp: A GPNodeConstraints is a Clique which defines constraint information common to many different GPNode functions, namely return types, child types, and number of children.
GPNodeConstraints() - Constructor for class ec.gp.GPNodeConstraints
GPNodeGatherer - Class in ec.gp: GPNodeGatherer is a small container object for the GPNode.nodeInPosition(...) method and GPNode.numNodes(...) method.
GPNodeGatherer() - Constructor for class ec.gp.GPNodeGatherer
GPNodeParent - Interface in ec.gp: GPNodeParent is a Prototype which identifies objects which may be parents of GPNodes, namely: GPTrees and GPNodes.
GPNODEPRINTTAB - Static variable in class ec.gp.GPNode
GPNodeSelector - Interface in ec.gp: GPNodeSelector is a Prototype which describes algorithms which select random nodes out of trees, typically marking them for mutation, crossover, or whatnot.
GPProblem - Class in ec.gp: A GPProblem is a Problem which is meant to efficiently handle GP evaluation.
GPProblem() - Constructor for class ec.gp.GPProblem
GPSetType - Class in ec.gp: A GPSetType is a GPType which contains GPAtomicTypes in a set, and is used as a generic GP type.
GPSetType() - Constructor for class ec.gp.GPSetType: You should not construct new types.
GPSpecies - Class in ec.gp: GPSpecies is a simple individual which is suitable as a species for GP subpopulations.
GPSpecies() - Constructor for class ec.gp.GPSpecies
GPTree - Class in ec.gp: GPTree is a GPNodeParent which holds the root GPNode of a tree of GPNodes.
GPTree() - Constructor for class ec.gp.GPTree
GPTreeConstraints - Class in ec.gp: A GPTreeConstraints is a Clique which defines constraint information common to many different GPTree trees, namely the tree type, builder, and function set.
GPTreeConstraints() - Constructor for class ec.gp.GPTreeConstraints
GPType - Class in ec.gp: GPType is a Clique which represents types in Strongly-Typed Genetic Programming (STGP).
GPType() - Constructor for class ec.gp.GPType
greaterIsBetter_ - Variable in class com.parabon.ec.simple.SimpleBoundedFitness: If true numerically greater fitness values are better.
GreedyOverselection - Class in ec.select: GreedyOverselection is a SelectionMethod which implements Koza-style fitness-proportionate greedy overselection.
GreedyOverselection() - Constructor for class ec.select.GreedyOverselection
Group - Interface in ec: Groups are used for populations and subpopulations.
GroupedProblemForm - Interface in ec.coevolve: GroupedProblemForm.java
groupSize - Variable in class ec.coevolve.CompetitiveEvaluator
GrowBuilder - Class in ec.gp.koza: GrowBuilder is a GPNodeBuilder which implements the GROW tree building method described in Koza I/II.
GrowBuilder() - Constructor for class ec.gp.koza.GrowBuilder
growNode(EvolutionState, int, int, GPType, int, GPNodeParent, int, GPFunctionSet) - Method in class ec.gp.koza.KozaBuilder: A private function which recursively returns a GROW tree to newRootedTree(...)
gt(Object, Object) - Method in interface ec.util.SortComparator: Returns true if a > b, else false
gt(long, long) - Method in interface ec.util.SortComparatorL: Returns true if a > b, else false

H

H0 - Class in ec.app.twobox.func
H0() - Constructor for class ec.app.twobox.func.H0
H1 - Class in ec.app.twobox.func
H1() - Constructor for class ec.app.twobox.func.H1
HalfBuilder - Class in ec.gp.koza: HalfBuilder is a GPNodeBuilder which implements the RAMPED HALF-AND-HALF tree building method described in Koza I/II.
HalfBuilder() - Constructor for class ec.gp.koza.HalfBuilder
hashCode() - Method in class ec.gp.GPIndividual
hashCode() - Method in class ec.Individual: Returns a hashcode for the individual, such that individuals which are equals(...) each other always return the same hash code.
hashCode() - Method in class ec.rule.Rule: Rulerates a hash code for this rule -- the rule for this is that the hash code must be the same for two rules that are equal to each other genetically.
hashCode() - Method in class ec.rule.RuleIndividual
hashCode() - Method in class ec.rule.RuleSet: The hash code for the rule set.
hashCode() - Method in class ec.vector.BitVectorIndividual
hashCode() - Method in class ec.vector.ByteVectorIndividual
hashCode() - Method in class ec.vector.DoubleVectorIndividual
hashCode() - Method in class ec.vector.FloatVectorIndividual
hashCode() - Method in class ec.vector.GeneVectorIndividual
hashCode() - Method in class ec.vector.IntegerVectorIndividual
hashCode() - Method in class ec.vector.LongVectorIndividual
hashCode() - Method in class ec.vector.ShortVectorIndividual
hashCode() - Method in class ec.vector.VectorGene: Generates a hash code for this gene -- the rule for this is that the hash code must be the same for two genes that are equal to each other genetically.
hits - Variable in class ec.gp.koza.KozaFitness: This auxillary measure is used in some problems for additional information.

I

i_prototype - Variable in class ec.Species: The prototypical individual for this species.
iAmServer - Variable in class ec.exchange.IslandExchange: whether the server should be running on the current island or not
If - Class in ec.app.multiplexer.func
If() - Constructor for class ec.app.multiplexer.func.If
If - Class in ec.app.multiplexerslow.func
If() - Constructor for class ec.app.multiplexerslow.func.If
IfFoodAhead - Class in ec.app.ant.func
IfFoodAhead() - Constructor for class ec.app.ant.func.IfFoodAhead
ignoresThrowable() - Method in class com.parabon.ec.logging.DirectLayout
IMasterProblemServer - Interface in ec.eval: Interface implemented by both the ECJ master/slave problem and the ORIGIN Frontier task distributed problem classes.
immigrantsSelectionMethod - Variable in class ec.exchange.IslandExchange: the selection method for emigrants
ind - Variable in class ec.QueueIndividual
indexToLocation(int) - Method in interface ec.spatial.Space: The Space provide a bijectional mapping from indexes in the subpopulation to locations in space.
indexToLocation(int) - Method in class ec.spatial.Spatial1DSubpopulation: 1D mapping is identity
Individual - Class in ec: An Individual is an item in the EC population stew which is evaluated and assigned a fitness which determines its likelihood of selection.
Individual() - Constructor for class ec.Individual
INDIVIDUAL_EXISTS_PREAMBLE - Static variable in class ec.pso.PSOSubpopulation
INDIVIDUAL_INDEX_PREAMBLE - Static variable in class ec.Subpopulation
individualCount - Variable in class ec.steadystate.SteadyStateEvolutionState: How many individuals have we added to the initial population?
individualGeneMinMaxUsed() - Method in class ec.vector.FloatVectorSpecies
individualGeneMinMaxUsed() - Method in class ec.vector.IntegerVectorSpecies
individualHash - Variable in class ec.steadystate.SteadyStateEvolutionState: Hash table to check for duplicate individuals
individualReplaced(SteadyStateEvolutionState, int, int, int) - Method in class ec.BreedingPipeline
individualReplaced(SteadyStateEvolutionState, int, int, int) - Method in class ec.parsimony.BucketTournamentSelection
individualReplaced(SteadyStateEvolutionState, int, int, int) - Method in class ec.parsimony.DoubleTournamentSelection
individualReplaced(SteadyStateEvolutionState, int, int, int) - Method in class ec.parsimony.LexicographicTournamentSelection
individualReplaced(SteadyStateEvolutionState, int, int, int) - Method in class ec.parsimony.ProportionalTournamentSelection
individualReplaced(SteadyStateEvolutionState, int, int, int) - Method in class ec.parsimony.RatioBucketTournamentSelection
individualReplaced(SteadyStateEvolutionState, int, int, int) - Method in class ec.select.FirstSelection
individualReplaced(SteadyStateEvolutionState, int, int, int) - Method in class ec.select.RandomSelection
individualReplaced(SteadyStateEvolutionState, int, int, int) - Method in class ec.select.TournamentSelection
individualReplaced(SteadyStateEvolutionState, int, int, int) - Method in class ec.steadystate.SteadyStateBreeder: Called whenever individuals have been replaced by new individuals in the population.
individualReplaced(SteadyStateEvolutionState, int, int, int) - Method in interface ec.steadystate.SteadyStateBSourceForm: Called whenever an individual has been replaced by another in the population.
individuals - Variable in class ec.Subpopulation: The subpopulation's individuals.
individualsBredStatistics(SteadyStateEvolutionState, Individual[], int[], int[]) - Method in class com.parabon.ec.DummyStatistics
individualsBredStatistics(SteadyStateEvolutionState, Individual[], int[], int[]) - Method in class ec.Statistics: STEADY-STATE: called each time new individuals are bred during the steady-state process.
individualsBredStatistics(SteadyStateEvolutionState, Individual[], int[], int[]) - Method in interface ec.steadystate.SteadyStateStatisticsForm: Called each time new individuals are bred during the steady-state process.
individualsEvaluatedStatistics(SteadyStateEvolutionState, Individual[], Individual[], int[], int[]) - Method in class com.parabon.ec.DummyStatistics
individualsEvaluatedStatistics(SteadyStateEvolutionState) - Method in class ec.gp.koza.KozaStatistics: Steady State only: loads any additional post-generation boundary stragglers into best_of_run.
individualsEvaluatedStatistics(SteadyStateEvolutionState, Individual[], Individual[], int[], int[]) - Method in class ec.simple.SimpleStatistics: Steady State only: loads any additional post-generation boundary stragglers into best_of_run.
individualsEvaluatedStatistics(SteadyStateEvolutionState, Individual[], Individual[], int[], int[]) - Method in class ec.Statistics: STEADY-STATE: called each time new individuals are evaluated during the steady-state process.
individualsEvaluatedStatistics(SteadyStateEvolutionState, Individual[], Individual[], int[], int[]) - Method in interface ec.steadystate.SteadyStateStatisticsForm: Called each time new individuals are evaluated during the steady-state process, NOT including the initial generation's individuals.
inds - Variable in class ec.eval.Job
INDS_PRODUCED - Static variable in class ec.breed.BufferedBreedingPipeline
INDS_PRODUCED - Static variable in class ec.gp.koza.CrossoverPipeline
INDS_PRODUCED - Static variable in class ec.gp.koza.MutationPipeline
INDS_PRODUCED - Static variable in class ec.rule.breed.RuleCrossoverPipeline
INDS_PRODUCED - Static variable in class ec.rule.breed.RuleMutationPipeline
INDS_PRODUCED - Static variable in class ec.SelectionMethod
indsToDieSelectionMethod - Variable in class ec.exchange.IslandExchange: the selection method for individuals to be replaced by immigrants
info - Variable in class ec.exchange.AbstractIslandExchangeServer: Maps between island ids and info structures
init - Variable in class ec.gp.GPTreeConstraints: The builder for the tree
INITIAL_ARGUMENT_SIZE - Static variable in class ec.gp.ADFContext
INITIAL_STACK_SIZE - Static variable in class ec.gp.ADFStack
initialError(String) - Static method in class ec.util.Output: Prints an initial error to System.err.
initialError(String, Parameter) - Static method in class ec.util.Output: Prints an initial error to System.err.
initialError(String, Parameter, Parameter) - Static method in class ec.util.Output: Prints an initial error to System.err.
initialize(ParameterDatabase, int) - Static method in class ec.Evolve: Initializes an evolutionary run given the parameters and a random seed adjustment (added to each random seed).
initializeContacts(EvolutionState) - Method in class ec.eval.MasterProblem: Initialize contacts with the slaves
initializeContacts(EvolutionState) - Method in class ec.Evaluator: Called to set up remote evaluation network contacts when the run is started.
initializeContacts(EvolutionState) - Method in class ec.exchange.InterPopulationExchange: Initializes contacts with other processes, if that's what you're doing.
initializeContacts(EvolutionState) - Method in class ec.exchange.IslandExchange: Initializes contacts with other processes, if that's what you're doing.
initializeContacts(EvolutionState) - Method in class ec.Exchanger: Initializes contacts with other processes, if that's what you're doing.
initializeContacts(EvolutionState) - Method in class ec.Problem: Called to set up remote evaluation network contacts when the run is started.
initializeContacts(EvolutionState) - Method in class ec.simple.SimpleExchanger: Doesn't do anything.
initializeGenomeSegment(EvolutionState, Parameter, Parameter, int) - Method in class ec.vector.IntegerVectorSpecies
initializer - Variable in class ec.EvolutionState: The population initializer, a singleton object.
Initializer - Class in ec: The Initializer is a singleton object whose job is to initialize the population at the beginning of the run.
Initializer() - Constructor for class ec.Initializer
initialPopulation(EvolutionState, int) - Method in class ec.Initializer: Creates and returns a new initial population for the evolutionary run.
initialPopulation(EvolutionState, int) - Method in class ec.simple.SimpleInitializer: Creates, populates, and returns a new population by making a new population, calling setup(...) on it, and calling populate(...) on it, assuming an unthreaded environment (thread 0).
initialVelocityScale - Variable in class ec.pso.PSOSubpopulation
inNumericalTypeRange(double) - Method in class ec.vector.FloatVectorSpecies
inNumericalTypeRange(long) - Method in class ec.vector.IntegerVectorSpecies
input - Variable in class ec.app.ant.Ant
input - Variable in class ec.app.edge.Edge
input - Variable in class ec.app.lawnmower.Lawnmower
input - Variable in class ec.app.multiplexer.Multiplexer
input - Variable in class ec.app.multiplexerslow.Multiplexer
input - Variable in class ec.app.parity.Parity
input - Variable in class ec.app.regression.Regression
input - Variable in class ec.app.twobox.TwoBox
input - Variable in class ec.eval.DataPipe: The input stream
input - Variable in class ec.util.DataPipe: The input stream
inputs - Variable in class ec.app.regression.Regression
inputsh0 - Variable in class ec.app.twobox.TwoBox
inputsh1 - Variable in class ec.app.twobox.TwoBox
inputsl0 - Variable in class ec.app.twobox.TwoBox
inputsl1 - Variable in class ec.app.twobox.TwoBox
inputsw0 - Variable in class ec.app.twobox.TwoBox
inputsw1 - Variable in class ec.app.twobox.TwoBox
inReserve - Variable in class ec.gp.ADFStack
inssort(byte[]) - Static method in class ec.util.QuickSort: Insertion Sort
inssort(short[]) - Static method in class ec.util.QuickSort: Insertion Sort
inssort(char[]) - Static method in class ec.util.QuickSort: Insertion Sort
inssort(int[]) - Static method in class ec.util.QuickSort: Insertion Sort
inssort(long[]) - Static method in class ec.util.QuickSort: Insertion Sort
inssort(float[]) - Static method in class ec.util.QuickSort: Insertion Sort
inssort(double[]) - Static method in class ec.util.QuickSort: Insertion Sort
inssort(Object[], SortComparator) - Static method in class ec.util.QuickSort: Insertion Sort
inssort(long[], SortComparatorL) - Static method in class ec.util.QuickSort: Insertion Sort
inssort(int[], SortComparatorL) - Static method in class ec.util.QuickSort: Insertion Sort
IntegerVectorIndividual - Class in ec.vector: IntegerVectorIndividual is a VectorIndividual whose genome is an array of ints.
IntegerVectorIndividual() - Constructor for class ec.vector.IntegerVectorIndividual
IntegerVectorSpecies - Class in ec.vector: IntegerVectorSpecies is a subclass of VectorSpecies with special constraints for integral vectors, namely ByteVectorIndividual, ShortVectorIndividual, IntegerVectorIndividual, and LongVectorIndividual.
IntegerVectorSpecies() - Constructor for class ec.vector.IntegerVectorSpecies
InternalCrossoverPipeline - Class in ec.gp.breed: InternalCrossoverPipeline picks two subtrees from somewhere within an individual, and crosses them over.
InternalCrossoverPipeline() - Constructor for class ec.gp.breed.InternalCrossoverPipeline
interpolate(Object) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Interpolates parameter values, unwrapping locators.
interpolateCurdir(String) - Static method in class com.parabon.ec.util.ParameterConfiguration: Replaces all $ in the string with the current directory path.
InterPopulationExchange - Class in ec.exchange: InterPopulationExchange is an Exchanger which implements a simple exchanger between subpopulations.
InterPopulationExchange() - Constructor for class ec.exchange.InterPopulationExchange
intForNode(GPNode) - Method in class ec.gp.build.Uniform
IOutput - Interface in ec.util
IParameterDatabase - Interface in ec.util
isIdeal - Variable in class ec.simple.SimpleFitness
isIdealFitness() - Method in class com.parabon.ec.simple.SimpleBoundedFitness
isIdealFitness() - Method in class ec.Fitness: Should return true if this is a good enough fitness to end the run
isIdealFitness() - Method in class ec.gp.koza.KozaFitness
isIdealFitness() - Method in class ec.multiobjective.MultiObjectiveFitness: Returns true if this fitness is the "ideal" fitness.
isIdealFitness() - Method in class ec.simple.SimpleFitness
isInRange() - Method in class ec.vector.ByteVectorIndividual: Returns true if each gene value is within is specified [min,max] range.
isInRange() - Method in class ec.vector.DoubleVectorIndividual: Returns true if each gene value is within is specified [min,max] range.
isInRange() - Method in class ec.vector.FloatVectorIndividual: Returns true if each gene value is within is specified [min,max] range.
isInRange() - Method in class ec.vector.IntegerVectorIndividual: Returns true if each gene value is within is specified [min,max] range.
isInRange() - Method in class ec.vector.LongVectorIndividual: Returns true if each gene value is within is specified [min,max] range.
isInRange() - Method in class ec.vector.ShortVectorIndividual: Returns true if each gene value is within is specified [min,max] range.
island_ids - Variable in class ec.exchange.AbstractIslandExchangeServer: Island ids from parameter files
IslandExchange - Class in ec.exchange: IslandExchange is an Exchanger which implements a simple but quite functional asynchronous island model for doing massive parallel distribution of evolution across beowulf clusters.
IslandExchange() - Constructor for class ec.exchange.IslandExchange
IslandExchangeServer - Class in ec.exchange: The IslandExchangeServer is the class that manages the main server that coordinates all the islands.
IslandExchangeServer() - Constructor for class ec.exchange.IslandExchangeServer
IslandExchangeServer.IslandExchangeIslandInfo - Class in ec.exchange: A class indicating all the information the server knows about a given island, including its mod, size, offset, and all the migrating islands it hooks to, etc.
IslandExchangeServer.IslandExchangeIslandInfo() - Constructor for class ec.exchange.IslandExchangeServer.IslandExchangeIslandInfo
IslandInfo - Class in ec.exchange: Describes one island and the network of islands it exchanges individuals with.
IslandInfo() - Constructor for class ec.exchange.IslandInfo
islands() - Method in class ec.exchange.AbstractIslandExchangeServer
isLeaf(Object) - Method in class ec.util.ReflectedObject
isLoggingToSystemOut - Variable in class ec.util.Log
isNextEvaluatedIndividualAvailable() - Method in class ec.steadystate.SteadyStateEvaluator: Returns true if an evaluated individual is in the queue and ready to come back to us.
isRestartedFromCheckpoint() - Method in class com.parabon.ec.Evolve

J

J_CENTER - Static variable in class ec.app.edge.Edge
J_LEFT - Static variable in class ec.app.edge.Edge
J_RIGHT - Static variable in class ec.app.edge.Edge
Job - Class in ec.eval: Job.java This class stores information regarding a job submitted to a Slave: the individuals, the subpopulations in which they are stored, a scratch array for the individuals used internally, and various coevolutionary information (whether we should only count victories single-elimination-tournament style; which individuals should have their fitnesses updated).
Job() - Constructor for class ec.eval.Job
job - Variable in class ec.EvolutionState: Current job iteration variables, set by Evolve.
join(RuleSet) - Method in class ec.rule.RuleSet: Makes a copy of the rules in another RuleSet and adds the rule copies.
join(Object[]) - Method in class ec.vector.BitVectorIndividual: Joins the n pieces and sets the genome to their concatenation.
join(Object[]) - Method in class ec.vector.ByteVectorIndividual: Joins the n pieces and sets the genome to their concatenation.
join(Object[]) - Method in class ec.vector.DoubleVectorIndividual: Joins the n pieces and sets the genome to their concatenation.
join(Object[]) - Method in class ec.vector.FloatVectorIndividual: Joins the n pieces and sets the genome to their concatenation.
join(Object[]) - Method in class ec.vector.GeneVectorIndividual: Joins the n pieces and sets the genome to their concatenation.
join(Object[]) - Method in class ec.vector.IntegerVectorIndividual: Joins the n pieces and sets the genome to their concatenation.
join(Object[]) - Method in class ec.vector.LongVectorIndividual: Joins the n pieces and sets the genome to their concatenation.
join(Object[]) - Method in class ec.vector.ShortVectorIndividual: Joins the n pieces and sets the genome to their concatenation.
join(Object[]) - Method in class ec.vector.VectorIndividual: Joins the n pieces and sets the genome to their concatenation.
justify(String, int, int) - Static method in class ec.app.edge.Edge

K

K - Variable in class ec.de.Rand1EitherOrDEBreeder
KozaBuilder - Class in ec.gp.koza
KozaBuilder() - Constructor for class ec.gp.koza.KozaBuilder
KozaFitness - Class in ec.gp.koza: KozaFitness is a Fitness which stores an individual's fitness as described in Koza I.
KozaFitness() - Constructor for class ec.gp.koza.KozaFitness
KozaNodeSelector - Class in ec.gp.koza: KozaNodeSelector is a GPNodeSelector which picks nodes in trees a-la Koza I, with the addition of having a probability of always picking the root.
KozaNodeSelector() - Constructor for class ec.gp.koza.KozaNodeSelector
KozaShortStatistics - Class in ec.gp.koza: A Koza-style statistics generator, intended to be easily parseable with awk or other Unix tools.
KozaShortStatistics() - Constructor for class ec.gp.koza.KozaShortStatistics
KozaStatistics - Class in ec.gp.koza: A simple Koza-style statistics generator.
KozaStatistics() - Constructor for class ec.gp.koza.KozaStatistics

L

l - Variable in class ec.util.DecodeReturn: Stores booleans (0=false), bytes, chars, shorts, ints, longs
L0 - Class in ec.app.twobox.func
L0() - Constructor for class ec.app.twobox.func.L0
L1 - Class in ec.app.twobox.func
L1() - Constructor for class ec.app.twobox.func.L1
lambda - Variable in class ec.es.MuCommaLambdaBreeder
lastTime - Variable in class ec.gp.koza.KozaShortStatistics
lastTime - Variable in class ec.simple.SimpleShortStatistics
lastUsage - Variable in class ec.gp.koza.KozaShortStatistics
lastUsage - Variable in class ec.simple.SimpleShortStatistics
LawnERC - Class in ec.app.lawnmower.func
LawnERC() - Constructor for class ec.app.lawnmower.func.LawnERC
Lawnmower - Class in ec.app.lawnmower: Lawnmower implements the Koza-II Lawnmower problem.
Lawnmower() - Constructor for class ec.app.lawnmower.Lawnmower
LawnmowerData - Class in ec.app.lawnmower
LawnmowerData() - Constructor for class ec.app.lawnmower.LawnmowerData
LawnmowerStatistics - Class in ec.app.lawnmower
LawnmowerStatistics() - Constructor for class ec.app.lawnmower.LawnmowerStatistics
Left - Class in ec.app.ant.func
Left() - Constructor for class ec.app.ant.func.Left
Left - Class in ec.app.lawnmower.func
Left() - Constructor for class ec.app.lawnmower.func.Left
lengths - Variable in class ec.simple.SimpleShortStatistics
LexicographicTournamentSelection - Class in ec.parsimony: Does a simple tournament selection, limited to the subpopulation it's working in at the time.
LexicographicTournamentSelection() - Constructor for class ec.parsimony.LexicographicTournamentSelection
lightClone() - Method in class ec.gp.GPIndividual: Like clone(), but doesn't force the GPTrees to deep-clone themselves.
lightClone() - Method in class ec.gp.GPNode
lightClone() - Method in class ec.gp.GPTree: Like clone() but doesn't copy the tree.
lineNumber - Variable in class ec.util.DecodeReturn: The Line number, if it has been posted.
list(PrintStream, boolean) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Prints out all the parameters in the database.
list(PrintStream) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Prints out all the parameters in the database, but not shadowed parameters.
list(PrintWriter) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Prints out all the parameters in the database, but not shadowed parameters.
list(PrintWriter, boolean) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Prints out all the parameters in the database.
list(PrintStream, boolean) - Method in interface ec.util.IParameterDatabase: Prints out all the parameters in the database.
list(PrintStream) - Method in interface ec.util.IParameterDatabase: Prints out all the parameters in the database, but not shadowed parameters.
list(PrintWriter) - Method in interface ec.util.IParameterDatabase: Prints out all the parameters in the database, but not shadowed parameters.
list(PrintWriter, boolean) - Method in interface ec.util.IParameterDatabase: Prints out all the parameters in the database.
list(PrintStream, boolean) - Method in class ec.util.ParameterDatabase: Prints out all the parameters in the database.
list(PrintStream) - Method in class ec.util.ParameterDatabase: Prints out all the parameters in the database, but not shadowed parameters.
list(PrintWriter) - Method in class ec.util.ParameterDatabase: Prints out all the parameters in the database, but not shadowed parameters.
list(PrintWriter, boolean) - Method in class ec.util.ParameterDatabase: Prints out all the parameters in the database.
listAccessed(PrintWriter) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Prints out all the parameters marked as accessed ("gotten" by some getFoo(...) method), plus their values.
listAccessed(PrintWriter) - Method in interface ec.util.IParameterDatabase: Prints out all the parameters marked as accessed ("gotten" by some getFoo(...) method), plus their values.
listAccessed(PrintWriter) - Method in class ec.util.ParameterDatabase: Prints out all the parameters marked as accessed ("gotten" by some getFoo(...) method), plus their values.
listGotten(PrintWriter) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Prints out all the parameters marked as used, plus their values.
listGotten(PrintWriter) - Method in interface ec.util.IParameterDatabase: Prints out all the parameters marked as used, plus their values.
listGotten(PrintWriter) - Method in class ec.util.ParameterDatabase: Prints out all the parameters marked as used, plus their values.
listNotAccessed(PrintWriter) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Prints out all the parameters NOT marked as accessed, plus their values.
listNotAccessed(PrintWriter) - Method in interface ec.util.IParameterDatabase: Prints out all the parameters NOT marked as used, plus their values.
listNotAccessed(PrintWriter) - Method in class ec.util.ParameterDatabase: Prints out all the parameters NOT marked as used, plus their values.
listNotGotten(PrintWriter) - Method in class com.parabon.ec.util.CollectionsParameterDatabase: Prints out all the parameters NOT marked as used, plus their values.
listNotGotten(PrintWriter) - Method in interface ec.util.IParameterDatabase: Prints out all the parameters NOT marked as used, plus their values.
listNotGotten(PrintWriter) - Method in class ec.util.ParameterDatabase: Prints out all the parameters NOT marked as used, plus their values.
load(InputStream) - Method in class com.parabon.ec.util.ParameterConfiguration: Loads parameters from an input stream.
loadArchive(EvolutionState, Population) - Method in class ec.multiobjective.spea2.SPEA2Breeder: A private helper function for breedPopulation which loads the archive (top end of indivudal array) with the SPEA2 elites.
loadConfig(PropertiesConfiguration, InputStream) - Method in class com.parabon.ec.util.ParameterConfiguration: Loads parameters from an input stream.
loadElites(EvolutionState, Subpopulation, int) - Method in class ec.coevolve.MultiPopCoevolutionaryEvaluator
loadElites(EvolutionState, Population) - Method in class ec.simple.SimpleBreeder: A private helper function for breedPopulation which loads elites into a subpopulation.
loadInds - Variable in class ec.Subpopulation: A new subpopulation should be loaded from this file if it is non-null; otherwise they should be created at random.
loadParameterDatabase(String[]) - Static method in class ec.Evolve: Loads a ParameterDatabase from checkpoint if "-params" is in the command-line arguments.
LocatedPropertiesConfiguration - Class in com.parabon.ec.util: A properties configuration database where the file each property was read from is stored with the property along with its value.
LocatedPropertiesConfiguration() - Constructor for class com.parabon.ec.util.LocatedPropertiesConfiguration: Constructs empty database.
LocatedPropertiesConfiguration(String) - Constructor for class com.parabon.ec.util.LocatedPropertiesConfiguration: Constructs database loaded from a property file.
LocatedPropertiesConfiguration(File) - Constructor for class com.parabon.ec.util.LocatedPropertiesConfiguration: Constructs database loaded from property file.
LocatedSystemConfiguration - Class in com.parabon.ec.util: Configuration database initialized from the current Java system properties.
LocatedSystemConfiguration() - Constructor for class com.parabon.ec.util.LocatedSystemConfiguration: Creates database loaded with system properties.
locationToIndex(Object) - Method in interface ec.spatial.Space: The Space should provide a bijectional mapping from locations in space to indexes in the subpopulation.
locationToIndex(Object) - Method in class ec.spatial.Spatial1DSubpopulation: 1D mapping is identity
log - Static variable in class com.parabon.ec.Evolve
log - Static variable in class com.parabon.ec.steadystate.SteadyStateEvolutionState
Log - Class in ec.app.regression.func
Log() - Constructor for class ec.app.regression.func.Log
log - Static variable in class ec.eval.MasterProblem
Log - Class in ec.util: Defines a log to which Output outputs.
Log(File, int, boolean, boolean) - Constructor for class ec.util.Log: Creates a log to a given filename; this file may or may not be appended to on restart, depending on _appendOnRestart.
Log(File, int, boolean, boolean, boolean) - Constructor for class ec.util.Log: Creates a log to a given filename; this file may or may not be appended to on restart, depending on _appendOnRestart.
Log(int, int, boolean) - Constructor for class ec.util.Log: Creates a log on stdout (descriptor == Log.D_STDOUT) or stderr (descriptor == Log.D_STDERR).
Log(Writer, LogRestarter, int, boolean, boolean) - Constructor for class ec.util.Log: Creates a log on a given Writer and custom LogRestarter.
log(int) - Method in class ec.util.Output
LoggerOutput - Class in com.parabon.ec.logging: Drop-in replacement for Output that uses Log4j for logging.
LoggerOutput() - Constructor for class com.parabon.ec.logging.LoggerOutput: Constructs the logger.
LogRestarter - Class in ec.util: A LogRestarter is an abstract superclass of objects which are capable of restarting logs after a computer failure.
LogRestarter() - Constructor for class ec.util.LogRestarter
LongVectorIndividual - Class in ec.vector: LongVectorIndividual is a VectorIndividual whose genome is an array of longs.
LongVectorIndividual() - Constructor for class ec.vector.LongVectorIndividual
Loop - Class in ec.app.edge.func
Loop() - Constructor for class ec.app.edge.func.Loop
lt(Object, Object) - Method in interface ec.util.SortComparator: Returns true if a < b, else false
lt(long, long) - Method in interface ec.util.SortComparatorL: Returns true if a < b, else false

M

M_11 - Static variable in class ec.app.multiplexer.Fast: 11-Multiplexer bitfield values for the 11 boolean variables and 1 output variable, where each of the 12 variable slots is an array of 32 longs (32 x 64 bits = 2048) which together comprise the big long 2048-bit permutation vector for that variable.
M_11_NAMES - Static variable in class ec.app.multiplexer.Fast: 11-Multiplexer names for the 11 boolean variables and 1 output variable
M_11_OUTPUT - Static variable in class ec.app.multiplexer.Fast: 11-Multiplexer has 11 boolean variables (A0, A1, A2, D0, D1, D2, D3, D4, D5, D6, D7)
M_11_SIZE - Static variable in class ec.app.multiplexer.Fast: 11-Multiplexer has 2048 permutations of its 11 boolean variables
M_3 - Static variable in class ec.app.multiplexer.Fast: 3-Multiplexer bitfield values for the 3 boolean variables and 1 output variable, stored as bytes (8 bits used)
M_3_NAMES - Static variable in class ec.app.multiplexer.Fast: 3-Multiplexer names for the 3 boolean variables and 1 output variable
M_3_OUTPUT - Static variable in class ec.app.multiplexer.Fast: 3-Multiplexer has 3 boolean variables (A0, D0, D1)
M_3_SIZE - Static variable in class ec.app.multiplexer.Fast: 3-Multiplexer has 8 permutations of its 3 boolean variables
M_6 - Static variable in class ec.app.multiplexer.Fast: 6-Multiplexer bitfield values for the 6 boolean variables and 1 output variable, stored as longs (64 bits used)
M_6_NAMES - Static variable in class ec.app.multiplexer.Fast: 6-Multiplexer names for the 6 boolean variables and 1 output variable
M_6_OUTPUT - Static variable in class ec.app.multiplexer.Fast: 6-Multiplexer has 6 boolean variables (A0, A1, D0, D1, D2, D3)
M_6_SIZE - Static variable in class ec.app.multiplexer.Fast: 6-Multiplexer has 64 permutations of its 6 boolean variables
mailbox_capacity - Variable in class ec.exchange.IslandExchangeServer.IslandExchangeIslandInfo: the mailbox capacity (for each of the subpopulations)
main(String[]) - Static method in class com.parabon.ec.Evolve: Main program.
main(String[]) - Static method in class ec.eval.Slave
main(String[]) - Static method in class ec.Evolve: Top-level evolutionary loop.
main(String[]) - Static method in class ec.exchange.IslandExchange
main(String[]) - Static method in class ec.util.MersenneTwister: Tests the code.
main(String[]) - Static method in class ec.util.MersenneTwisterFast: Tests the code.
main(String[]) - Static method in class ec.util.ParameterDatabase: Test the ParameterDatabase
make(int, EvolutionState, int) - Method in class ec.parsimony.DoubleTournamentSelection: Produces the index of a person selected from among several by a tournament.
makeCTree(boolean, boolean, boolean) - Method in class ec.gp.GPNode: Producess a String consisting of the tree in pseudo-C form, given that the parent already will wrap the expression in parentheses (or not).
makeLatexTree() - Method in class ec.gp.GPNode: Produces the LaTeX code for a LaTeX tree of the subtree rooted at this node, using the epic and fancybox packages, as described in sections 10.5.2 (page 307) and 10.1.3 (page 278) of The LaTeX Companion, respectively.
map - Variable in class ec.app.ant.Ant
map - Variable in class ec.app.lawnmower.Lawnmower
MasterProblem - Class in ec.eval: MasterProblem.java
MasterProblem() - Constructor for class ec.eval.MasterProblem
MasterProblemServer - Class in ec.eval: MasterProblemServer.java
MasterProblemServer() - Constructor for class ec.eval.MasterProblemServer: zero-argument constructor for deserialization
MasterProblemServer(boolean) - Constructor for class ec.eval.MasterProblemServer
maxarity - Variable in class ec.gp.build.Uniform
maxChildProduction() - Method in class ec.BreedingPipeline: Returns the maximum among the typicalIndsProduced() for any children -- a function that's useful internally, not very useful for you to call externally.
maxDepth - Variable in class ec.gp.breed.InternalCrossoverPipeline: The deepest tree the pipeline is allowed to form.
maxDepth - Variable in class ec.gp.build.PTC1: The largest maximum tree depth PTC1 can specify -- should be big.
maxDepth - Variable in class ec.gp.build.PTC2: The largest maximum tree depth GROW can specify -- should be big.
maxDepth - Variable in class ec.gp.koza.CrossoverPipeline: The deepest tree the pipeline is allowed to form.
maxDepth - Variable in class ec.gp.koza.KozaBuilder: The largest maximum tree depth RAMPED HALF-AND-HALF can specify.
maxGene - Variable in class ec.vector.FloatVectorSpecies
maxGene(int) - Method in class ec.vector.FloatVectorSpecies
maxGene - Variable in class ec.vector.IntegerVectorSpecies
maxGene(int) - Method in class ec.vector.IntegerVectorSpecies
maxGeneratable - Variable in class ec.breed.GenerationSwitchPipeline
maxGeneratable - Variable in class ec.breed.MultiBreedingPipeline
maxGenes - Variable in class ec.vector.FloatVectorSpecies: Set to null if not specified
maxGenes - Variable in class ec.vector.IntegerVectorSpecies: Set to null if not specified
maxIndsEvaluating_ - Variable in class com.parabon.ec.steadystate.SteadyStateEvolutionState
maxIndsToCreate_ - Variable in class com.parabon.ec.steadystate.SteadyStateEvolutionState
maxMoves - Variable in class ec.app.ant.Ant
MAXPRINTBYTES - Static variable in class ec.gp.GPNode
maxSize - Variable in class ec.gp.GPNodeBuilder: the minium possible size -- if unused, it's 0
maxSize - Variable in class ec.rule.RuleSetConstraints
maxtreesize - Variable in class ec.gp.build.Uniform
maxx - Variable in class ec.app.ant.Ant
maxx - Variable in class ec.app.lawnmower.func.LawnERC
maxx - Variable in class ec.app.lawnmower.Lawnmower
maxy - Variable in class ec.app.ant.Ant
maxy - Variable in class ec.app.lawnmower.func.LawnERC
maxy - Variable in class ec.app.lawnmower.Lawnmower
me - Variable in class ec.simple.SimpleEvaluator.SimpleEvaluatorThread
MersenneTwister - Class in ec.util: MersenneTwister and MersenneTwisterFast
MersenneTwister() - Constructor for class ec.util.MersenneTwister: Constructor using the default seed.
MersenneTwister(long) - Constructor for class ec.util.MersenneTwister: Constructor using a given seed.
MersenneTwister(int[]) - Constructor for class ec.util.MersenneTwister: Constructor using an array of integers as seed.
MersenneTwisterFast - Class in ec.util: MersenneTwister and MersenneTwisterFast
MersenneTwisterFast() - Constructor for class ec.util.MersenneTwisterFast: Constructor using the default seed.
MersenneTwisterFast(long) - Constructor for class ec.util.MersenneTwisterFast: Constructor using a given seed.
MersenneTwisterFast(int[]) - Constructor for class ec.util.MersenneTwisterFast: Constructor using an array of integers as seed.
message(String) - Method in class com.parabon.ec.logging.LoggerOutput
message() - Static method in class com.parabon.ec.util.Version
message(String) - Method in interface ec.util.IOutput: Posts a message.
message(String) - Method in class ec.util.Output
message() - Static method in class ec.util.Version
migrating_island_ids - Variable in class ec.exchange.IslandInfo: Ihe ids of the islands to send individuals to
MIN_ARRAY_SIZE - Static variable in class ec.app.edge.Edge
MIN_QUEUE_SIZE - Static variable in class ec.gp.build.PTC2
minChildProduction() - Method in class ec.BreedingPipeline: Returns the minimum among the typicalIndsProduced() for any children -- a function that's useful internally, not very useful for you to call externally.
minDepth - Variable in class ec.gp.koza.KozaBuilder: The smallest maximum tree depth RAMPED HALF-AND-HALF can specify.
minGene - Variable in class ec.vector.FloatVectorSpecies
minGene(int) - Method in class ec.vector.FloatVectorSpecies
minGene - Variable in class ec.vector.IntegerVectorSpecies
minGene(int) - Method in class ec.vector.IntegerVectorSpecies
minGenes - Variable in class ec.vector.FloatVectorSpecies: Set to null if not specified
minGenes - Variable in class ec.vector.IntegerVectorSpecies: Set to null if not specified
minimumJavaVersion - Static variable in class ec.util.Version
minSize - Variable in class ec.gp.GPNodeBuilder
minSize - Variable in class ec.rule.RuleSetConstraints
MODULO - Static variable in class ec.app.lawnmower.func.V8a
modulo - Variable in class ec.exchange.IslandExchange: how often to send individuals
modulo - Variable in class ec.exchange.IslandInfo: how often to send individuals
Move - Class in ec.app.ant.func
Move() - Constructor for class ec.app.ant.func.Move
moveFromSubstack(int) - Method in class ec.gp.ADFStack: Moves n items onto the stack (popss them off the substack and pushes them onto the stack).
moveOntoSubstack(int) - Method in class ec.gp.ADFStack: Moves n items onto the substack (pops them off the stack and pushes them onto the substack).
moves - Variable in class ec.app.ant.Ant
moves - Variable in class ec.app.lawnmower.Lawnmower
Mow - Class in ec.app.lawnmower.func
Mow() - Constructor for class ec.app.lawnmower.func.Mow
mu - Variable in class ec.es.MuCommaLambdaBreeder
MuCommaLambdaBreeder - Class in ec.es: MuCommaLambdaBreeder is a Breeder which, together with ESSelection, implements the (mu,lambda) breeding strategy and gathers the comparison data you can use to implement a 1/5-rule mutation mechanism.
MuCommaLambdaBreeder() - Constructor for class ec.es.MuCommaLambdaBreeder
Mul - Class in ec.app.regression.func
Mul() - Constructor for class ec.app.regression.func.Mul
Mul - Class in ec.app.twobox.func
Mul() - Constructor for class ec.app.twobox.func.Mul
MULTI_11_BITLENGTH - Static variable in class ec.app.multiplexer.MultiplexerData: The length of an atomic data element in Multiplexer-11 (a long)
MULTI_11_NUM_BITSTRINGS - Static variable in class ec.app.multiplexer.MultiplexerData: The number of atomic elements in Multiplexer-11 comprising one string (32)
MULTI_3_BITLENGTH - Static variable in class ec.app.multiplexer.MultiplexerData: The length of an atomic data element in Multiplexer-3 (a byte)
MULTI_6_BITLENGTH - Static variable in class ec.app.multiplexer.MultiplexerData: The length of an atomic data element in Multiplexer-6 (a long)
MultiBreedingPipeline - Class in ec.breed: MultiBreedingPipeline is a BreedingPipeline stores some n child sources; each time it must produce an individual or two, it picks one of these sources at random and has it do the production.
MultiBreedingPipeline() - Constructor for class ec.breed.MultiBreedingPipeline
multifitness - Variable in class ec.multiobjective.MultiObjectiveFitness: The various fitnesses.
MultiObjectiveDefaults - Class in ec.multiobjective
MultiObjectiveDefaults() - Constructor for class ec.multiobjective.MultiObjectiveDefaults
MultiObjectiveFitness - Class in ec.multiobjective: MultiObjectiveFitness is a subclass of Fitness which implements basic multi-objective mechanisms suitable for being used with a variety of multi-objective selection mechanisms, including ones using pareto-optimality.
MultiObjectiveFitness() - Constructor for class ec.multiobjective.MultiObjectiveFitness
Multiplexer - Class in ec.app.multiplexer: Multiplexer implements the family of n-Multiplexer problems.
Multiplexer() - Constructor for class ec.app.multiplexer.Multiplexer
Multiplexer - Class in ec.app.multiplexerslow: Multiplexer implements the family of n-Multiplexer problems.
Multiplexer() - Constructor for class ec.app.multiplexerslow.Multiplexer
MultiplexerData - Class in ec.app.multiplexer: This is ugly and complicated because it needs to hold a variety of different-length bitstrings, including temporary ones held while computing subtrees.
MultiplexerData() - Constructor for class ec.app.multiplexer.MultiplexerData
MultiplexerData - Class in ec.app.multiplexerslow
MultiplexerData() - Constructor for class ec.app.multiplexerslow.MultiplexerData
MultiPopCoevolutionaryEvaluator - Class in ec.coevolve: MultiPopCoevolutionaryEvaluator.java
MultiPopCoevolutionaryEvaluator() - Constructor for class ec.coevolve.MultiPopCoevolutionaryEvaluator
MultiSelection - Class in ec.select: MultiSelection is a SelectionMethod which stores some n subordinate SelectionMethods.
MultiSelection() - Constructor for class ec.select.MultiSelection
MuPlusLambdaBreeder - Class in ec.es: MuPlusLambdaBreeder is a subclass of MuCommaLambdaBreeder which, together with ESSelection, implements the (mu + lambda) breeding strategy and gathers the comparison data you can use to implement a 1/5-rule mutation mechanism.
MuPlusLambdaBreeder() - Constructor for class ec.es.MuPlusLambdaBreeder
mustClone - Variable in class ec.breed.ReproductionPipeline
mutate(EvolutionState, int) - Method in class ec.rule.Rule: Mutate the rule.
mutate(EvolutionState, int) - Method in class ec.vector.VectorGene: Mutate the gene.
MutateAllNodesPipeline - Class in ec.gp.breed: MutateAllNodesPipeline implements the AllNodes mutation algorithm described in Kumar Chellapilla, "A Preliminary Investigation into Evolving Modular Programs without Subtree Crossover", GP98.
MutateAllNodesPipeline() - Constructor for class ec.gp.breed.MutateAllNodesPipeline
MutateDemotePipeline - Class in ec.gp.breed: MutateDemotePipeline works very similarly to the DemoteNode algorithm described in Kumar Chellapilla, "A Preliminary Investigation into Evolving Modular Programs without Subtree Crossover", GP98, and is also similar to the "insertion" operator found in Una-May O'Reilly's thesis, "An Analysis of Genetic Programming".
MutateDemotePipeline() - Constructor for class ec.gp.breed.MutateDemotePipeline
mutateERC(EvolutionState, int) - Method in class ec.gp.ERC: Mutates the node's "value".
MutateERCPipeline - Class in ec.gp.breed: MutateERCPipeline works very similarly to the "Gaussian" algorithm described in Kumar Chellapilla, "A Preliminary Investigation into Evolving Modular Programs without Subtree Crossover", GP98.
MutateERCPipeline() - Constructor for class ec.gp.breed.MutateERCPipeline
mutateERCs(GPNode, EvolutionState, int) - Method in class ec.gp.breed.MutateERCPipeline
MutateOneNodePipeline - Class in ec.gp.breed: MutateOneNodesPipeline implements the OneNode mutation algorithm described in Kumar Chellapilla, "A Preliminary Investigation into Evolving Modular Programs without Subtree Crossover", GP98.
MutateOneNodePipeline() - Constructor for class ec.gp.breed.MutateOneNodePipeline
MutatePromotePipeline - Class in ec.gp.breed: MutatePromotePipeline works very similarly to the PromoteNode algorithm described in Kumar Chellapilla, "A Preliminary Investigation into Evolving Modular Programs without Subtree Crossover", GP98, and is also similar to the "deletion" operator found in Una-May O'Reilly's thesis, "An Analysis of Genetic Programming".
MutatePromotePipeline() - Constructor for class ec.gp.breed.MutatePromotePipeline
mutateRules(EvolutionState, int) - Method in class ec.rule.RuleSet: Mutates rules in the RuleSet independently with the given probability.
MutateSwapPipeline - Class in ec.gp.breed: MutateSwapPipeline works very similarly to the Swap algorithm described in Kumar Chellapilla, "A Preliminary Investigation into Evolving Modular Programs without Subtree Crossover", GP98.
MutateSwapPipeline() - Constructor for class ec.gp.breed.MutateSwapPipeline
MutationPipeline - Class in ec.gp.koza: MutationPipeline is a GPBreedingPipeline which implements a strongly-typed version of the "Point Mutation" operator as described in Koza I.
MutationPipeline() - Constructor for class ec.gp.koza.MutationPipeline
mutationProbability - Variable in class ec.vector.VectorSpecies: Probability that a gene will mutate
mutationType - Variable in class ec.vector.FloatVectorSpecies: What kind of mutation do we have?
mybase - Variable in class ec.BreedingPipeline: My parameter base -- I keep it around so I can print some messages that are useful with it (not deep cloned)

N

N_BUCKETS_DEFAULT - Static variable in class ec.parsimony.BucketTournamentSelection: Default number of buckets
N_RULES - Static variable in class ec.rule.RuleSet: The message to appear when printing the rule set
name - Static variable in class com.parabon.ec.util.Version
name() - Method in class ec.app.lawnmower.func.LawnERC
name() - Method in class ec.app.regression.func.RegERC
name - Variable in class ec.exchange.IslandInfo: Island name
name() - Method in class ec.gp.ERC: Returns the lowercase "name" of this ERC function class, some simple, short name which distinguishes this class from other ERC function classes you're using.
name - Variable in class ec.gp.GPFunctionSet: Name of the GPFunctionSet
name - Variable in class ec.gp.GPNodeConstraints: The name of the GPNodeConstraints object -- this is NOT the name of the GPNode
name - Variable in class ec.gp.GPTreeConstraints
name - Variable in class ec.gp.GPType: The name of the type
name - Variable in class ec.rule.RuleConstraints: The name of the RuleConstraints object
name - Variable in class ec.rule.RuleSetConstraints: The name of the RuleSetConstraints object
name - Static variable in class ec.util.Version
Nand - Class in ec.app.parity.func
Nand() - Constructor for class ec.app.parity.func.Nand
negA - Variable in class ec.app.edge.Edge
negT - Variable in class ec.app.edge.Edge
NEIGHBORHOOD_BEST_PREAMBLE - Static variable in class ec.pso.PSOSubpopulation
neighborhoodBests - Variable in class ec.pso.PSOSubpopulation
neighborhoodSize - Variable in class ec.pso.PSOSubpopulation
newIndividual(EvolutionState, int) - Method in class ec.gp.GPSpecies
newIndividual(EvolutionState, LineNumberReader) - Method in class ec.gp.GPSpecies
newIndividual(EvolutionState, DataInput) - Method in class ec.gp.GPSpecies
newIndividual(EvolutionState, int) - Method in class ec.rule.RuleSpecies
newIndividual(EvolutionState, int) - Method in class ec.Species: Provides a brand-new individual to fill in a population.
newIndividual(EvolutionState, LineNumberReader) - Method in class ec.Species: Provides an individual read from a stream, including the fitness; the individual will appear as it was written by printIndividual(...).
newIndividual(EvolutionState, DataInput) - Method in class ec.Species: Provides an individual read from a DataInput source, including the fitness.
newIndividual(EvolutionState, int) - Method in class ec.vector.VectorSpecies
newinds - Variable in class ec.eval.Job
newRootedTree(EvolutionState, GPType, int, GPNodeParent, GPFunctionSet, int, int) - Method in class ec.gp.build.PTC1
newRootedTree(EvolutionState, GPType, int, GPNodeParent, GPFunctionSet, int, int) - Method in class ec.gp.build.PTC2
newRootedTree(EvolutionState, GPType, int, GPNodeParent, GPFunctionSet, int, int) - Method in class ec.gp.build.RandomBranch
newRootedTree(EvolutionState, GPType, int, GPNodeParent, GPFunctionSet, int, int) - Method in class ec.gp.bui