Uses of Class
ec.Individual

Packages that use Individual

com.parabon.ec
ec
ec.app.ant
ec.app.coevolve1
ec.app.coevolve2
ec.app.ecsuite
ec.app.edge
ec.app.lawnmower
ec.app.multiplexer	The Koza-I Boolean-Multiplexer problem.
ec.app.multiplexerslow	The original ECJ implementation of the Koza-I Boolean-Multiplexer problem.
ec.app.parity
ec.app.regression
ec.app.sum
ec.app.twobox
ec.breed
ec.coevolve
ec.de	Differential Evolution Algorithms.
ec.es
ec.eval
ec.gp
ec.gp.breed
ec.gp.koza
ec.multiobjective.spea2	Strength Pareto Evolutionary Algorithm implementation.
ec.parsimony
ec.rule
ec.rule.breed
ec.select
ec.simple
ec.spatial
ec.steadystate
ec.vector
ec.vector.breed

Uses of Individual in com.parabon.ec

Methods in com.parabon.ec with parameters of type Individual

void	DummyStatistics.individualsBredStatistics(SteadyStateEvolutionState state, Individual[] newIndividuals, int[] subpopulations, int[] indicies)
void	DummyStatistics.individualsEvaluatedStatistics(SteadyStateEvolutionState state, Individual[] newIndividuals, Individual[] oldIndividuals, int[] subpopulations, int[] indicies)
void	DummyStatistics.individualsEvaluatedStatistics(SteadyStateEvolutionState state, Individual[] newIndividuals, Individual[] oldIndividuals, int[] subpopulations, int[] indicies)

Uses of Individual in ec

Fields in ec declared as Individual

Individual	Species.i_prototype The prototypical individual for this species.
Individual	QueueIndividual.ind
Individual[]	Subpopulation.individuals The subpopulation's individuals.

Methods in ec that return Individual

Individual	Species.newIndividual(EvolutionState state, java.io.DataInput dataInput) Provides an individual read from a DataInput source, including the fitness.
Individual	Species.newIndividual(EvolutionState state, int thread) Provides a brand-new individual to fill in a population.
Individual	Species.newIndividual(EvolutionState state, java.io.LineNumberReader reader) Provides an individual read from a stream, including the fitness; the individual will appear as it was written by printIndividual(...).

Methods in ec with parameters of type Individual

void	Problem.describe(Individual ind, EvolutionState state, int threadnum, int log, int verbosity) Deprecated.
void	Problem.describe(Individual ind, EvolutionState state, int subpopulation, int threadnum, int log, int verbosity)
void	Problem.evaluate(EvolutionState state, Individual ind, int threadnum) Deprecated.
void	Problem.evaluate(EvolutionState state, Individual ind, int subpopulation, int threadnum)
void	Statistics.individualsBredStatistics(SteadyStateEvolutionState state, Individual[] newIndividuals, int[] subpopulations, int[] indicies) STEADY-STATE: called each time new individuals are bred during the steady-state process.
void	Statistics.individualsEvaluatedStatistics(SteadyStateEvolutionState state, Individual[] newIndividuals, Individual[] oldIndividuals, int[] subpopulations, int[] indicies) STEADY-STATE: called each time new individuals are evaluated during the steady-state process.
void	Statistics.individualsEvaluatedStatistics(SteadyStateEvolutionState state, Individual[] newIndividuals, Individual[] oldIndividuals, int[] subpopulations, int[] indicies) STEADY-STATE: called each time new individuals are evaluated during the steady-state process.
int	SelectionMethod.produce(int min, int max, int start, int subpopulation, Individual[] inds, EvolutionState state, int thread)
abstract int	BreedingSource.produce(int min, int max, int start, int subpopulation, Individual[] inds, EvolutionState state, int thread) Produces n individuals from the given subpopulation and puts them into inds[start...start+n-1], where n = Min(Max(q,min),max), where q is the "typical" number of individuals the BreedingSource produces in one shot, and returns n.

Constructors in ec with parameters of type Individual

QueueIndividual(Individual i, int s)

Uses of Individual in ec.app.ant

Methods in ec.app.ant with parameters of type Individual

void	Ant.describe(Individual ind, EvolutionState state, int threadnum, int log, int verbosity)
void	Ant.evaluate(EvolutionState state, Individual ind, int subpopulation, int threadnum)

Uses of Individual in ec.app.coevolve1

Methods in ec.app.coevolve1 with parameters of type Individual

void	CompetitiveMaxOne.evaluate(EvolutionState state, Individual[] ind, boolean[] updateFitness, boolean countVictoriesOnly, int threadnum)
void	CompetitiveMaxOne.evaluate(EvolutionState state, Individual[] ind, boolean[] updateFitness, boolean countVictoriesOnly, int[] subpops, int threadnum)

Uses of Individual in ec.app.coevolve2

Methods in ec.app.coevolve2 with parameters of type Individual

void	CoevolutionaryRosenbrock.evaluate(EvolutionState state, Individual[] ind, boolean[] updateFitness, boolean countVictoriesOnly, int threadnum)
void	CoevolutionaryRosenbrock.evaluate(EvolutionState state, Individual[] ind, boolean[] updateFitness, boolean countVictoriesOnly, int[] subpops, int threadnum)

Uses of Individual in ec.app.ecsuite

Methods in ec.app.ecsuite with parameters of type Individual

void	ECSuite.describe(Individual ind, EvolutionState state, int threadnum, int log, int verbosity)
void	ECSuite.describe(Individual ind, EvolutionState state, int subpopulation, int threadnum, int log, int verbosity)
void	ECSuite.evaluate(EvolutionState state, Individual ind, int subpopulation, int threadnum)

Uses of Individual in ec.app.edge

Methods in ec.app.edge with parameters of type Individual

void	Edge.describe(Individual ind, EvolutionState state, int threadnum, int log, int verbosity)
java.lang.String	Edge.describeShortGeneralized(Individual ind, EvolutionState state, int threadnum)
void	Edge.evaluate(EvolutionState state, Individual ind, int subpopulation, int threadnum)
void	Edge.fullTest(EvolutionState state, Individual ind, int threadnum, boolean[][] pos, boolean[][] neg) Tests an individual, returning its successful positives in totpos and its successful negatives in totneg.

Uses of Individual in ec.app.lawnmower

Methods in ec.app.lawnmower with parameters of type Individual

void	Lawnmower.describe(Individual ind, EvolutionState state, int threadnum, int log, int verbosity)
void	Lawnmower.evaluate(EvolutionState state, Individual ind, int subpopulation, int threadnum)

Uses of Individual in ec.app.multiplexer

Methods in ec.app.multiplexer with parameters of type Individual

void	Multiplexer.evaluate(EvolutionState state, Individual ind, int subpopulation, int threadnum)

Uses of Individual in ec.app.multiplexerslow

Methods in ec.app.multiplexerslow with parameters of type Individual

void	Multiplexer.evaluate(EvolutionState state, Individual ind, int subpopulation, int threadnum)

Uses of Individual in ec.app.parity

Methods in ec.app.parity with parameters of type Individual

void	Parity.evaluate(EvolutionState state, Individual ind, int subpopulation, int threadnum)

Uses of Individual in ec.app.regression

Methods in ec.app.regression with parameters of type Individual

void	Regression.evaluate(EvolutionState state, Individual ind, int subpopulation, int threadnum)

Uses of Individual in ec.app.sum

Methods in ec.app.sum with parameters of type Individual

void	Sum.describe(Individual ind, EvolutionState state, int threadnum, int log, int verbosity)
void	Sum.evaluate(EvolutionState state, Individual ind, int subpop, int threadnum)

Uses of Individual in ec.app.twobox

Methods in ec.app.twobox with parameters of type Individual

void	TwoBox.evaluate(EvolutionState state, Individual ind, int subpopulation, int threadnum)

Uses of Individual in ec.breed

Fields in ec.breed declared as Individual

Individual[]

BufferedBreedingPipeline.buffer

Methods in ec.breed with parameters of type Individual

int	ReproductionPipeline.produce(int min, int max, int start, int subpopulation, Individual[] inds, EvolutionState state, int thread)
int	MultiBreedingPipeline.produce(int min, int max, int start, int subpopulation, Individual[] inds, EvolutionState state, int thread)
int	ForceBreedingPipeline.produce(int min, int max, int start, int subpopulation, Individual[] inds, EvolutionState state, int thread)
int	GenerationSwitchPipeline.produce(int min, int max, int start, int subpopulation, Individual[] inds, EvolutionState state, int thread)
int	BufferedBreedingPipeline.produce(int min, int max, int start, int subpopulation, Individual[] inds, EvolutionState state, int thread)

Uses of Individual in ec.coevolve

Methods in ec.coevolve with parameters of type Individual

void	CompetitiveEvaluator.evalNRandomOneWay(EvolutionState state, int[] from, int[] numinds, Individual[] individuals, GroupedProblemForm prob)
void	CompetitiveEvaluator.evalNRandomOneWayPopChunk(EvolutionState state, int from, int numinds, int threadnum, Individual[] individuals, GroupedProblemForm prob)
void	CompetitiveEvaluator.evalNRandomTwoWay(EvolutionState state, int[] from, int[] numinds, Individual[] individuals, GroupedProblemForm prob)
void	CompetitiveEvaluator.evalNRandomTwoWayPopChunk(EvolutionState state, int from, int numinds, int threadnum, Individual[] individuals, GroupedProblemForm prob)
void	CompetitiveEvaluator.evalPseudoRoundRobin(EvolutionState state, Individual[] individuals, GroupedProblemForm prob)
void	CompetitiveEvaluator.evalPseudoRoundRobinPopChunk(EvolutionState state, int from, int numinds, int threadnum, Individual[] individuals, GroupedProblemForm prob)
void	CompetitiveEvaluator.evalRoundRobin(EvolutionState state, int[] from, int[] numinds, Individual[] individuals, GroupedProblemForm prob)
void	CompetitiveEvaluator.evalRoundRobinPopChunk(EvolutionState state, int from, int numinds, int threadnum, Individual[] individuals, GroupedProblemForm prob) A private helper function for evalutatePopulation which evaluates a chunk of individuals in a subpopulation for a given thread.
void	CompetitiveEvaluator.evalSingleElimination(EvolutionState state, Individual[] individuals, GroupedProblemForm prob)
void	GroupedProblemForm.evaluate(EvolutionState state, Individual[] ind, boolean[] updateFitness, boolean countVictoriesOnly, int threadnum) Deprecated.
void	GroupedProblemForm.evaluate(EvolutionState state, Individual[] ind, boolean[] updateFitness, boolean countVictoriesOnly, int[] subpops, int threadnum) Evaluates the individuals found in ind together.
void	CompetitiveEvaluator.randomizeOrder(EvolutionState state, Individual[] individuals)

Uses of Individual in ec.de

Fields in ec.de declared as Individual

Individual[]

Best1BinDEBreeder.bestSoFar

Methods in ec.de that return Individual

Individual	Best1BinDEBreeder.createIndividual(EvolutionState state, int subpop, Individual[] inds, int index, int thread)
Individual	Rand1EitherOrDEBreeder.createIndividual(EvolutionState state, int subpop, Individual[] inds, int index, int thread)
Individual	DEBreeder.createIndividual(EvolutionState state, int subpop, Individual[] inds, int index, int thread)
Individual	Rand1ExpDEBreeder.createIndividual(EvolutionState state, int subpop, Individual[] inds, int index, int thread)

Methods in ec.de with parameters of type Individual

Individual	Best1BinDEBreeder.createIndividual(EvolutionState state, int subpop, Individual[] inds, int index, int thread)
Individual	Rand1EitherOrDEBreeder.createIndividual(EvolutionState state, int subpop, Individual[] inds, int index, int thread)
Individual	DEBreeder.createIndividual(EvolutionState state, int subpop, Individual[] inds, int index, int thread)
Individual	Rand1ExpDEBreeder.createIndividual(EvolutionState state, int subpop, Individual[] inds, int index, int thread)

Uses of Individual in ec.es

Methods in ec.es with parameters of type Individual

int	ESSelection.produce(int min, int max, int start, int subpopulation, Individual[] inds, EvolutionState state, int thread)

Uses of Individual in ec.eval

Fields in ec.eval declared as Individual

Individual[]	Job.inds
Individual[]	Job.newinds

Methods in ec.eval that return Individual

Individual	MasterProblem.getNextEvaluatedIndividual(EvolutionState state) This method blocks until an individual is available from the slaves (which will cause evaluatedIndividualAvailable() to return true), at which time it returns the individual.
Individual	SlaveMonitor.waitForIndividual()
Individual	MasterProblemServer.waitForIndividual(EvolutionState state)
Individual	IMasterProblemServer.waitForIndividual(EvolutionState state) Wait for one individual to complete evaluation.

Methods in ec.eval with parameters of type Individual

void	MasterProblem.describe(Individual ind, EvolutionState state, int threadnum, int log, int verbosity)
void	MasterProblem.describe(Individual ind, EvolutionState state, int subpopulation, int threadnum, int log, int verbosity)
void	MasterProblem.evaluate(EvolutionState state, Individual[] ind, boolean[] updateFitness, boolean countVictoriesOnly, int threadnum)
void	MasterProblem.evaluate(EvolutionState state, Individual[] inds, boolean[] updateFitness, boolean countVictoriesOnly, int[] subpops, int threadnum)
void	MasterProblem.evaluate(EvolutionState state, Individual ind, int subpopulation, int threadnum)

Uses of Individual in ec.gp

Subclasses of Individual in ec.gp

class

GPIndividual GPIndividual is an Individual used for GP evolution runs.

Methods in ec.gp that return Individual

Individual	GPSpecies.newIndividual(EvolutionState state, java.io.DataInput dataInput)
Individual	GPSpecies.newIndividual(EvolutionState state, int thread)
Individual	GPSpecies.newIndividual(EvolutionState state, java.io.LineNumberReader reader)

Methods in ec.gp with parameters of type Individual

void	GPProblem.describe(Individual ind, EvolutionState state, int subpopulation, int threadnum, int log, int verbosity)

Uses of Individual in ec.gp.breed

Methods in ec.gp.breed with parameters of type Individual

int	RehangPipeline.produce(int min, int max, int start, int subpopulation, Individual[] inds, EvolutionState state, int thread)
int	MutatePromotePipeline.produce(int min, int max, int start, int subpopulation, Individual[] inds, EvolutionState state, int thread)
int	MutateERCPipeline.produce(int min, int max, int start, int subpopulation, Individual[] inds, EvolutionState state, int thread)
int	InternalCrossoverPipeline.produce(int min, int max, int start, int subpopulation, Individual[] inds, EvolutionState state, int thread)
int	MutateDemotePipeline.produce(int min, int max, int start, int subpopulation, Individual[] inds, EvolutionState state, int thread)
int	MutateSwapPipeline.produce(int min, int max, int start, int subpopulation, Individual[] inds, EvolutionState state, int thread)
int	MutateOneNodePipeline.produce(int min, int max, int start, int subpopulation, Individual[] inds, EvolutionState state, int thread)
int	MutateAllNodesPipeline.produce(int min, int max, int start, int subpopulation, Individual[] inds, EvolutionState state, int thread)

Uses of Individual in ec.gp.koza

Fields in ec.gp.koza declared as Individual

Individual[]	KozaStatistics.best_of_run The best individual we've found so far
Individual[]	KozaShortStatistics.best_of_run_a

Methods in ec.gp.koza with parameters of type Individual

int	CrossoverPipeline.produce(int min, int max, int start, int subpopulation, Individual[] inds, EvolutionState state, int thread)
int	MutationPipeline.produce(int min, int max, int start, int subpopulation, Individual[] inds, EvolutionState state, int thread)

Uses of Individual in ec.multiobjective.spea2

Methods in ec.multiobjective.spea2 with parameters of type Individual

int	SPEA2TournamentSelection.produce(int min, int max, int start, int subpopulation, Individual[] inds, EvolutionState state, int thread)
void	SPEA2Breeder.sort(Individual[] a) Private helper function which calls quicksort

Uses of Individual in ec.parsimony

Methods in ec.parsimony with parameters of type Individual

int	ProportionalTournamentSelection.produce(int min, int max, int start, int subpopulation, Individual[] inds, EvolutionState state, int thread)
void	TarpeianStatistics.setMinimumFitness(EvolutionState state, int subpopulation, Individual ind) Sets the fitness of an individual to the minimum fitness possible.

Uses of Individual in ec.rule

Subclasses of Individual in ec.rule

class

RuleIndividual RuleIndividual is an Individual with an array of RuleSets, each of which is a set of Rules.

Methods in ec.rule that return Individual

Individual

RuleSpecies.newIndividual(EvolutionState state, int thread)

Uses of Individual in ec.rule.breed

Methods in ec.rule.breed with parameters of type Individual

int	RuleCrossoverPipeline.produce(int min, int max, int start, int subpopulation, Individual[] inds, EvolutionState state, int thread)
int	RuleMutationPipeline.produce(int min, int max, int start, int subpopulation, Individual[] inds, EvolutionState state, int thread)

Uses of Individual in ec.select

Methods in ec.select with parameters of type Individual

int	MultiSelection.produce(int min, int max, int start, int subpopulation, Individual[] inds, EvolutionState state, int thread)
int	FirstSelection.produce(int min, int max, int start, int subpopulation, Individual[] inds, EvolutionState state, int thread)
int	TournamentSelection.produce(int min, int max, int start, int subpopulation, Individual[] inds, EvolutionState state, int thread)
int	RandomSelection.produce(int min, int max, int start, int subpopulation, Individual[] inds, EvolutionState state, int thread)

Uses of Individual in ec.simple

Fields in ec.simple declared as Individual

Individual[]	SimpleStatistics.best_of_run The best individual we've found so far
Individual[]	SimpleShortStatistics.best_of_run_a

Methods in ec.simple with parameters of type Individual

void	SimpleProblemForm.describe(Individual ind, EvolutionState state, int threadnum, int log, int verbosity) Deprecated.
void	SimpleProblemForm.describe(Individual ind, EvolutionState state, int subpopulation, int threadnum, int log, int verbosity) "Reevaluates" an individual, for the purpose of printing out interesting facts about the individual in the context of the Problem, and logs the results.
void	SimpleProblemForm.evaluate(EvolutionState state, Individual ind, int threadnum) Deprecated.
void	SimpleProblemForm.evaluate(EvolutionState state, Individual ind, int subpopulation, int threadnum) Evaluates the individual in ind, if necessary (perhaps not evaluating them if their evaluated flags are true), and sets their fitness appropriately.
void	SimpleStatistics.individualsEvaluatedStatistics(SteadyStateEvolutionState state, Individual[] newIndividuals, Individual[] oldIndividuals, int[] subpopulations, int[] indicies) Steady State only: loads any additional post-generation boundary stragglers into best_of_run.
void	SimpleStatistics.individualsEvaluatedStatistics(SteadyStateEvolutionState state, Individual[] newIndividuals, Individual[] oldIndividuals, int[] subpopulations, int[] indicies) Steady State only: loads any additional post-generation boundary stragglers into best_of_run.

Uses of Individual in ec.spatial

Methods in ec.spatial with parameters of type Individual

int	SpatialTournamentSelection.produce(int min, int max, int start, int subpopulation, Individual[] inds, EvolutionState state, int thread)

Uses of Individual in ec.steadystate

Methods in ec.steadystate that return Individual

Individual

SteadyStateBreeder.breedIndividual(EvolutionState state, int subpop, int thread)

Methods in ec.steadystate with parameters of type Individual

void	SteadyStateEvaluator.evaluateIndividual(EvolutionState state, Individual ind, int subpop) Submits an individual to be evaluated by the Problem, and adds it and its subpopulation to the queue.
void	SteadyStateStatisticsForm.individualsBredStatistics(SteadyStateEvolutionState state, Individual[] newIndividuals, int[] subpopulations, int[] indicies) Called each time new individuals are bred during the steady-state process.
void	SteadyStateStatisticsForm.individualsEvaluatedStatistics(SteadyStateEvolutionState state, Individual[] newIndividuals, Individual[] oldIndividuals, int[] subpopulations, int[] indicies) Called each time new individuals are evaluated during the steady-state process, NOT including the initial generation's individuals.
void	SteadyStateStatisticsForm.individualsEvaluatedStatistics(SteadyStateEvolutionState state, Individual[] newIndividuals, Individual[] oldIndividuals, int[] subpopulations, int[] indicies) Called each time new individuals are evaluated during the steady-state process, NOT including the initial generation's individuals.

Uses of Individual in ec.vector

Subclasses of Individual in ec.vector

class	BitVectorIndividual BitVectorIndividual is a VectorIndividual whose genome is an array of booleans.
class	ByteVectorIndividual ByteVectorIndividual is a VectorIndividual whose genome is an array of bytes.
class	DoubleVectorIndividual DoubleVectorIndividual is a VectorIndividual whose genome is an array of doubles.
class	FloatVectorIndividual FloatVectorIndividual is a VectorIndividual whose genome is an array of floats.
class	GeneVectorIndividual GeneVectorIndividual is a VectorIndividual whose genome is an array of VectorGenes.
class	IntegerVectorIndividual IntegerVectorIndividual is a VectorIndividual whose genome is an array of ints.
class	LongVectorIndividual LongVectorIndividual is a VectorIndividual whose genome is an array of longs.
class	ShortVectorIndividual ShortVectorIndividual is a VectorIndividual whose genome is an array of shorts.
class	VectorIndividual VectorIndividual is the abstract superclass of simple individual representations which consist of vectors of values (booleans, integers, floating-point, etc.)

Methods in ec.vector that return Individual

Individual

VectorSpecies.newIndividual(EvolutionState state, int thread)

Uses of Individual in ec.vector.breed

Methods in ec.vector.breed with parameters of type Individual

int	VectorCrossoverPipeline.produce(int min, int max, int start, int subpopulation, Individual[] inds, EvolutionState state, int thread)
int	VectorMutationPipeline.produce(int min, int max, int start, int subpopulation, Individual[] inds, EvolutionState state, int thread)